Publications

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2017
Šiler M, Jákl P, Brzobohatý O, Ryabov A, Filip R, Zemánek P. Thermally induced micro-motion by inflection in optical potential. Sci. Rep., 7, 1697 (2017).
2016
Mravec F, Obruča S, Krzyžánek V, Sedláček P, Hrubanová K, Samek O, Kučera D, Benešová P, Nebesářová J. Accumulation of PHA granules in Cupriavidus necator as seen by confocal fluorescence microscopy. FEMS Microbiology Letters, 363, 10 (2016).
Obruča S, Sedláček P, Krzyžánek V, Mravec F, Hrubanová K, Samek O, Kučera D, Benešová P, Márová I. Accumulation of Poly(3-hydroxybutyrate) Helps Bacterial Cells to Survive Freezing. PLoS ONE, 11, e0157778 (2016).
Brzobohatý O, Hernandez RJosue, Simpson SH, Mazzulla A, Cipparrone G, Zemánek P. Chiral particles in the dual-beam optical trap. Opt. Express, 24, 26382-26391 (2016).
Šiler M, Ježek J, Jákl P, Pilát Z, Zemánek P. Direct measurement of the temperature profile close to an optically trapped absorbing particle. Opt. Lett., 41, 870-873 (2016).
Antognozzi M, Bermingham CR, Harniman RL, Simpson SH, Senior J, Hayward R, Hoerber H, Dennis MR, Bekshaev AY, Bliokh KY, Nori F. Direct measurements of the extraordinary optical momentum and transverse spin-dependent force using a nano-cantilever. Nat. Phys., 12, 731-735 (2016).
Obruča S, Sedláček P, Mravec F, Samek O, Márová I. Evaluation of 3-hydroxybutyrate as an enzyme-protective agent against heating and oxidative damage and its potential role in stress response of poly(3-hydroxybutyrate) accumulating cells. Appl Microbiol Biotechnol, 100, 1365-1376 (2016).
Tomori Z, Keša P, Nikorovič M, Kaňka J, Jákl P, Šerý M, Bernatová S, Valušová E, Antalík M, Zemánek P. Holographic Raman tweezers controlled by Multimodal Natural User Interface. J. Opt., 18, 015602:1-9 (2016).
Hrubanová K, Samek O, Haroniková A, Bernatová S, Zemánek P, Márová I, Krzyžánek V. Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 22, S3 (2016).
Filip R, Zemánek P. Noise-to-signal transition of a Brownian particle in the cubic potential: I. general theory. Journal of Optics, 18, 065401 (2016).
Zemánek P, Šiler M, Brzobohatý O, Jákl P, Filip R. Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry. Journal of Optics, 18, 065402 (2016).
Irrera A, Magazzu A, Artoni P, Simpson SH, Hanna S, Jones PH, Priolo F, Gucciardi PGiuseppe, Maragò OM. Photonic Torque Microscopy of the Nonconservative Force Field for Optically Trapped Silicon Nanowires. Nano Lett., 16, 4181-4188 (2016).
Bzdek BR, Power RM, Simpson SH, Reid JP, Royall CP. Precise, contactless measurement of the surface tension of picolitre aerosol droplets. Chem. Sci., 7, 274-285 (2016).
Samek O, Obruča S, Šiler M, Sedláček P, Benešová P, Kučera D, Márová I, Ježek J, Bernatová S, Zemánek P. Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16. Sensors, 16, 1808 (2016).
Simpson SH, Chvátal L, Zemánek P. Synchronization of colloidal rotors through angular optical binding. Phys. Rev. A, 93, 023842 (2016).
Ryabov A, Zemánek P, Filip R. Thermally-induced passage and current of particles in highly unstable optical potential. Phys. Rev.E, 16, 042108 (2016).
2015
Baránek M, Bouchal P, Šiler M, Bouchal Z. Aberration resistant axial localization using a self-imaging of vortices. Opt. Express, 23, 15316–15331 (2015).
Chvátal L, Brzobohatý O, Zemánek P. Binding of a pair of Au nanoparticles in a wide Gaussian standing wave. Opt. Rev., 22, 157-161 (2015).
Brzobohatý O, Arzola AV, Šiler M, Chvátal L, Jákl P, Simpson SH, Zemánek P. Complex rotational dynamics of multiple spheroidal particles in a circularly polarized, dual beam trap. Opt. Express, 23, 7273-7287 (2015).
Krzyžánek V, Hrubanová K, Samek O, Obruča S, Márová I, Bernatová S, Šiler M, Zemánek P. Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria. Microscopy and Microanalysis, 21, 183-184 (2015).
Samek O, Bernatová S, Ježek J, Šiler M, Šerý M, Krzyžánek V, Hrubanová K, Zemánek P, Holá V, Růžička F. Identification of individual biofilm-forming bacterial cells using Raman tweezers. J. Biomed. Opt., 20, (2015).
Mlynariková K, Samek O, Bernatová S, Růžička F, Ježek J, Haroniková A, Šiler M, Zemánek P, Holá V. Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy. Sensors, 15, 29635-29647 (2015).
Hrubanová K, Bernatová S, Samek O, Šerý M, Zemánek P, Nebesářová J, Růžička F, Krzyžánek V. Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements. Microscopy and Microanalysis, 21, 187-188 (2015).
Brzobohatý O, Šiler M, Trojek J, Chvátal L, Karásek V, Zemánek P. Non-spherical gold nanoparticles trapped in optical tweezers: shape matters. Opt. Express, 23, 8179-8189 (2015).
Šiler M, Zemánek P. Optical trapping in secondary maxima of focused laser beam. J. Quant. Spectrosc. Radiat. Transf., 162, 114 - 121 (2015).
Burdiková Z, Svindrych Z, Hickey C, Wilkinson MG, Auty MAE, Samek O, Bernatová S, Krzyžánek V, Periasamy A, Sheehan JJ. SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry. Dairy Sci. Technol., 95, 687-700 (2015).
Samek O, Haroniková A, Vaškovicová N, Hrubanová K, Ježek J, Márová I, Krzyžánek V, Zemánek P. SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry. Microscopy and Microanalysis, 21, 1775-1776 (2015).
Brzobohatý O, Šiler M, Trojek J, Chvátal L, Karásek V, Paták A, Pokorná Z, Mika F, Zemánek P. Three-Dimensional Optical Trapping of a Plasmonic Nanoparticle using Low Numerical Aperture Optical Tweezers. Sci. Rep., 5, 8106 (2015).
Box S, Debono L, Phillips DB, Simpson SH. Transitional behavior in hydrodynamically coupled oscillators. Phys. Rev. E, 91, 022916 (2015).
2014
Pořízka P, Procházková P, Procházka D, Sládková L, Novotný J, Petrilak M, Brada M, Samek O, Pilát Z, Zemánek P, Adam V, Kizek R, Novotný J, Kaiser J. Algal Biomass Analysis by Laser-Based Analytical Techniques—A Review. Sensors, 14, 17725-17752 (2014).
Samek O, Mlynariková K, Bernatová S, Ježek J, Krzyžánek V, Šiler M, Zemánek P, Růžička F, Holá V, Mahelová M. Candida parapsilosis Biofilm Identification by Raman Spectroscopy. Int. J. Mol. Sci., 15, 23924-23935 (2014).
Jákl P, Arzola AV, Šiler M, Chvátal L, Volke-Sepúlveda K, Zemánek P. Optical sorting of nonspherical and living microobjects in moving interference structures. Opt. Express, 22, 29746-29760 (2014).
Arzola AV, Jákl P, Chvátal L, Zemánek P. Rotation, oscillation and hydrodynamic synchronization of optically trapped oblate spheroidal microparticles. Opt. Express, 22, 16207-16221 (2014).
2013
Arzola AV, Volke-Sepúlveda K, Mateos JL. Dynamical analysis of an optical rocking ratchet: Theory and experiment. Phys. Rev. E, 87, 062910:1-9 (2013).
Brzobohatý O, Karásek V, Šiler M, Chvátal L, Čižmár T, Zemánek P. Experimental demonstration of optical transport, sorting and self-arrangement using a `tractor beam'. Nature Photon., 7, 123-127 (2013).
Bernatová S, Samek O, Pilát Z, Šerý M, Ježek J, Jákl P, Šiler M, Krzyžánek V, Zemánek P, Holá V, Dvořáčková M, Růžička F. Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).
Tomori Z, Antalík M, Keša P, Kaňka J, Jákl P, Šerý M, Bernatová S, Zemánek P. Holographic Raman tweezers controlled by hand gestures and voice commands. Optics and Photonics Journal, 3, 331-336 (2013).
Šiler M, Chvátal L, Zemánek P. Metallic nanoparticles in a standing wave: optical force and heating. J. Quant. Spectrosc. Radiat. Transf., 126, 84-90 (2013).
Šiler M, Zemánek P. Optical forces in a non-diffracting vortex beam. J. Quant. Spectrosc. Radiat. Transf., 126, 78-83 (2013).
Brzobohatý O, Šiler M, Ježek J, Jákl P, Zemánek P. Optical manipulation of aerosol droplets using a holographic dual and single beam trap. Opt. Lett., 38, 4601-4604 (2013).
Pilát Z, Ježek J, Šerý M, Trtílek M, Nedbal L, Zemánek P. Optical trapping of microalgae at 735–1064 nm: Photodamage assessment. J. Photochem. Photobiol. B, 121, 27 - 31 (2013).
Aas M, Jonáš A, Kiraz A, Brzobohatý O, Ježek J, Pilát Z, Zemánek P. Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching. Opt. Express, 21, 21380-21394 (2013).
2012
Pořízka P, Procházka D, Pilát Z, Krajčarová L, Kaiser J, Malina R, Novotný J, Zemánek P, Ježek J, Šerý M, Bernatová S, Krzyžánek V, Dobranská K, Novotný K, Trtílek M, Samek O. Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology. Spectrochim. Acta B, 74-75, 169-176 (2012).
Trojek J, Chvátal L, Zemánek P. Optical alignment and confinement of an ellipsoidal nanorod in optical tweezers: a theoretical study. J. Opt. Soc. Am. A, 29, 1224–1236 (2012).
Šiler M, Jákl P, Brzobohatý O, Zemánek P. Optical forces induced behavior of a particle in a non-diffracting vortex beam. Opt. Express, 20, 24304-24319 (2012).
Pilát Z, Bernatová S, Ježek J, Šerý M, Samek O, Zemánek P, Nedbal L, Trtílek M. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. J. Appl. Phycol., 24, 541-546 (2012).
Šiler M, Čižmár T, Zemánek P. Speed enhancement of multi-particle chain in a traveling standing wave. Appl. Phys. Lett., 100, 051103 (2012).
2011
Samek O, Zemánek P, Jonáš A, Telle HH. Characterization of oil-producing microalgae using Raman spectroscopy. Laser Phys. Lett., 8, 701–709 (2011).
Brzobohatý O, Karásek V, Čižmár T, Zemánek P. Dynamic size tuning of multidimensional optically bound matter. Appl. Phys. Lett., 99, 101105 (2011).
Čižmár T, Brzobohatý O, Dholakia K, Zemánek P. The holographic optical micro-manipulation system based on counter-propagating beams. Laser Phys. Lett., 8, 50–56 (2011).

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