Publications

Export 201 results:
2023
Stibůrek M, Ondráčková P, Tuckova T, Turtaev S, Šiler M, Pikálek T, Jákl P, Gomes A, Krejci J, Kolbabkova P, Uhlirova H, Cizmar T. 110 mu m thin endo-microscope for deep-brain in vivo observations of neuronal connectivity, activity and blood flow dynamics. NATURE COMMUNICATIONS, 14, 1897 (2023).
Mouralova K, Benes L, Prokes T, Zahradnicek R, Fries J, Plichta T. Analysis of the machinability of different types of sintered carbides with WEDM in both water and oil baths. The International Journal of Advanced Manufacturing Technology, (2023).
Ozbakir Y, Jonas A, Kiraz A, Erkey C. Application of Aerogels in Optical Devices. Springer Handbook of Aerogels. (Aegerter MA, Leventis N, Koebel M, III SASteinered.), Springer International Publishing, Cham, s.1431–1454 (2023).
Koch SMarie, Freidank-Pohl C, Siontas O, Cortesao M, Mota A, Runzheimer K, Jung S, Rebrošová K, Šiler M, Moeller R, Meyer V. Aspergillus niger as a cell factory for the production of pyomelanin, a molecule with UV-C radiation shielding activity. Frontiers in Microbiology, 14, (2023).
Šiler M, Svak V, Jonáš A, Simpson SH, Brzobohatý O, Zemánek P. Bayesian Estimation of Experimental Parameters in Stochastic Inertial Systems: Theory, Simulations, and Experiments with Objects Levitated in Vacuum. Phys. Rev. Appl., 19, 064059 (2023).
Liška V, Zemánková T, Svak V, Jákl P, Ježek J, Bránecký M, Simpson SH, Zemánek P, Brzobohatý O. Cold damping of levitated optically coupled nanoparticles. Optica, 10, 1203–1209 (2023).
Cao H, Čižmár T, Turtaev S, Tyc T, Rotter S. Controlling light propagation in multimode fibers for imaging, spectroscopy, and beyond. Adv. Opt. Photon., 15, 524–612 (2023).
Arita Y, Simpson SH, Bruce GD, Wright EM, Zemánek P, Dholakia K. Cooling the optical-spin driven limit cycle oscillations of a levitated gyroscope. Commun. Phys., 6, 238 (2023).
Brodský J, Gablech I, Migliaccio L, Havlíček M, Donahue MJ, Głowacki ED. Downsizing the Channel Length of Vertical Organic Electrochemical Transistors. ACS Applied Materials & Interfaces, 15, 27002-27009 (2023).
Brodský J, Gablech I, Migliaccio L, Havli'cek M, Donahue MJJ, Glowacki EDD. Downsizing the Channel Length of Vertical Organic Electrochemical Transistors. ACS APPLIED MATERIALS & INTERFACES, 15, 27002-27009 (2023).
Siems K, Runzheimer K, Rebrošová K, Etzbach L, Auerhammer A, Rehm A, Schwengers O, Šiler M, Samek O, Růžička F, Moeller R. Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis. Frontiers in Microbiology, 14, (2023).
Průcha L, Lejeune M, Kizovský M, Materna-Mikmeková E. In-situ thermal Raman spectroscopy of single-layer graphene on different substrates. Materials Today Communications, 35, 105921 (2023).
Pořízka P, Brunnbauer L, Porkert M, Rozman U, Marolt G, Holub D, Kizovský M, Benešová M, Samek O, Limbeck A, Kaiser J, Kalčíková G. Laser-based techniques: Novel tools for the identification and characterization of aged microplastics with developed biofilm. Chemosphere, 313, 137373 (2023).
Tarbajova V, Kolackova M, Chaloupsky P, Dobesova M, Capal P, Pilat Z, Samek O, Zemánek P, Svec P, Sterbova DSkopalova, Vaculovicova M, Richtera L, Pérez-de-Mora A, Adam V, Huska D. Physiological and transcriptome profiling of Chlorella sorokiniana: A study on azo dye wastewater decolorization. Journal of Hazardous Materials, 460, 132450 (2023).
Rebrošová K, Bernatová S, Šiler M, Mašek J, Samek O, Ježek J, Kizovský M, Holá V, Zemánek P, Růžička F. Rapid Identification of Pathogens Causing Bloodstream Infections by Raman Spectroscopy and Raman Tweezers. Microbiology Spectrum, 11, e00028-23 (2023).
Vaculík O, Bernatová S, Rebrošová K, Samek O, Šilhan L, žička FRů, Šerý M, Šiler M, ek JJež, Zemánek P. Rapid identification of pathogens in blood serum via Raman tweezers in combination with advanced processing methods. Biomed. Opt. Express, 14, 6410–6421 (2023).
Volpe G, Maragò OM, Rubinsztein-Dunlop H, Pesce G, Stilgoe AB, Volpe G, Tkachenko G, Truong VGiang, Chormaic SNic, Kalantarifard F, Elahi P, Käll M, Callegari A, Marqués MI, Neves AAR, Moreira WL, Fontes A, Cesar CL, Saija R, Saidi A, Beck P, Eismann JS, Banzer P, Fernandes TFD, Pedaci F, Bowen WP, Vaippully R, Lokesh M, Roy B, Thalhammer-Thurner G, Ritsch-Marte M, García LPérez, Arzola AV, Castillo IPérez, Argun A, Muenker TM, Vos BE, Betz T, Cristiani I, Minzioni P, Reece PJ, Wang F, McGloin D, Ndukaife JC, Quidant R, Roberts RP, Laplane C, Volz T, Gordon R, Hanstorp D, Marmolejo JTello, Bruce GD, Dholakia K, Li T, Brzobohatý O, Simpson SH, Zemánek P, Ritort F, Roichman Y, Bobkova V, Wittkowski R, Denz C, Kumar GVPavan, Foti A, Donato MGrazia, Gucciardi PG, Gardini L, Bianchi G, Kashchuk AV, Capitanio M, Paterson L, Jones PH, Berg-Sørensen K, Barooji YF, Oddershede LB, Pouladian P, Preece D, Adiels CBeck, De Luca AChiara, Magazzù A, Ciriza DBronte, Iatì MAntonia, Swartzlander GA. Roadmap for optical tweezers. Journal of Physics: Photonics, 5, 022501 (2023).
Benešová M, Bernatová S, Mika F, Pokorná Z, Ježek J, Šiler M, Samek O, Růžička F, Rebrošová K, Zemánek P, Pilát Z. SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering. Biosensors, 13, 182 (2023).
Plichta T, Sulc V, Ohlidal M, Cech V. Stable a-CSi:H films with a wide range of modulus of elasticity and low internal stress. Surface and Coatings Technology, 459, 129147 (2023).
Brzobohatý O, Duchaň M, Jákl P, Ježek J, Šiler M, Zemánek P, Simpson SH. Synchronization of spin-driven limit cycle oscillators optically levitated in vacuum. Nature Communications, 14, 5441 (2023).
Čech V, Branecky M. Synthesis of thin-film materials using nonthermal plasma at a higher degree of dissociation. Plasma Processes and Polymers, 20, 2300019 (2023).
2022
Hrabina J, Hosek M, Rerucha S, Cizek M, Pilat Z, Zucco M, Lazar J, Cip O. Absolute frequencies of H13C14N hydrogen cyanide transitions in the 1.5-µm region with the saturated spectroscopy and a sub-kHz scanning laser. Opt. Lett., 47, 5704–5707 (2022).
Arita Y, Bruce GD, Wright EM, Simpson SH, Zemánek P, Dholakia K. All-optical sub-Kelvin sympathetic cooling of a levitated microsphere in vacuum. Optica, 9, 1000–1002 (2022).
Violi IL, Martinez LP, Barella M, Zaza C, Chvátal L, Zemánek P, Gutierrez MV, Paredes MY, Scarpettini AF, Olmos-Trigo J, Pais VR, Noblega IDiaz, Cortès E, Saenz JJose, Bragas AV, Gargiulo J, Stefani FD. Challenges on optical printing of colloidal nanoparticles. J. Chem. Phys., 156, 034201 (2022).
Jákl P, Šiler M, Ježek J, Cifuentes A, Trägårdh J, Zemánek P, Cizmar T. Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References. Photonics, 9, 37 (2022).
Mouralova K, Michna S, Zahradnicek R, Bednar J, Plichta T, Fries J. Experimental analysis of microhardness changes of subsurface areas affected by WEDM. Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering, 236, 1979-1991 (2022).
Meixner K, Daffert C, Dalnodar D, Mrazova K, Hrubanová K, Krzyzanek V, Nebesářová J, Samek O, Sedrlova Z, Slaninová E, Sedláček P, Obruča S, Fritz I. Glycogen, poly(3-hydroxybutyrate) and pigment accumulation in three Synechocystis strains when exposed to a stepwise increasing salt stress. JOURNAL OF APPLIED PHYCOLOGY, 34, 1227-1241 (2022).
Būtaitė UG, Kupianskyi H, Cizmar T, Phillips DB. How to Build the ``Optical Inverse'' of a Multimode Fibre. Intelligent Computing, 2022, 9816026 (2022).
Du Y, Turtaev S, Leite IT, Lorenz A, Kobelke J, Wondraczek K, Čižmár T. Hybrid multimode - multicore fibre based holographic endoscope for deep-tissue neurophotonics. Light: Advanced Manufacturing, 3, 1 (2022).
Karalko A, Kesa P, Jelinek F, Sefc L, Ježek J, Zemánek P, Grus T. In Vivo Contrast Imaging of Rat Heart with Carbon Dioxide Foam. SENSORS, 22, 5124 (2022).
Cifuentes A, Trägårdh J. A method for single particle tracking through a multimode fiber. Opt. Express, 30, 36055–36064 (2022).
Gomes AD, Turtaev S, Du Y, Čižmár T. Near perfect focusing through multimode fibres. Opt. Express, 30, 10645–10663 (2022).
Abdelfattah A, Ahuja S, Akkin T, Allu SRao, Boas DA, Brake J, Buckley EM, Campbell RE, Chen AI, Cheng X, Čižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, Khatib MEl, Emiliani V, Fomin-Thunemann N, Fainman Y, Alfonso TFernández, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kiliç K, Lake EMR, Li L, Li T, Mächler P, Mesquita RC, Miller EW, Nadella KMNaga Srini, U. Nägerl V, Nasu Y, Nimmerjahn A, Ondráčková P, Pavone FS, Campos CPerez, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakadžic S, Shoham S, Shroff SN, R. Silver A, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhlířová H, Xu C, Yang C, Yang M-H, Yellen G, Yizhar O, Zhao Y. Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics, 9, (2022).
Holub D, Pořízka P, Kizovský M, Prochazka D, Samek O, Kaiser J. The potential of combining laser-induced breakdown spectroscopy and Raman spectroscopy data for the analysis of wood samples. Spectrochimica Acta Part B: Atomic Spectroscopy, 195, 106487 (2022).
Mouralova K, Bednar J, Benes L, Plichta T, Prokes T, Fries J. Production of precision slots in copper foil using micro EDM. Scientific Reports, 12, 5023 (2022).
Rebrošová K, Samek O, Kizovský M, Bernatová S, Holá V, Růžička F. Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 12, 866463 (2022).
Rebrošová K, Bernatová S, Šiler M, Uhlirova M, Samek O, Ježek J, Holá V, Růžička F, Zemánek P. Raman spectroscopy—a tool for rapid differentiation among microbes causing urinary tract infections. Analytica Chimica Acta, 1191, 339292 (2022).
Gigan S, Katz O, de Aguiar HB, Andresen ERavn, Aubry A, Bertolotti J, Bossy E, Bouchet D, Brake J, Brasselet S, Bromberg Y, Cao H, Chaigne T, Cheng Z, Choi W, Čižmár T, Cui M, Curtis VR, Defienne H, Hofer M, Horisaki R, Horstmeyer R, Ji N, LaViolette AK, Mertz J, Moser C, Mosk AP, Pégard NC, Piestun R, Popoff S, Phillips DB, Psaltis D, Rahmani B, Rigneault H, Rotter S, Tian L, Vellekoop IM, Waller L, Wang L, Weber T, Xiao S, Xu C, Yamilov A, Yang C, Yılmaz H. Roadmap on wavefront shaping and deep imaging in complex media. Journal of Physics: Photonics, 4, 042501 (2022).
Novackova I, Hrabalova V, Slaninova E, Sedlacek P, Samek O, Koller M, Krzyzanek V, Hrubanova K, Mrazova K, Nebesarova J, Obruca S. The role of polyhydroxyalkanoates in adaptation of Cupriavidus necator to osmotic pressure and high concentration of copper ions. International Journal of Biological Macromolecules, 206, 977-989 (2022).
Pikálek T, Stibůrek M, Simpson S, Cizmar T, Trägårdh J. Suppression of the Non-Linear Background in a Multimode Fibre CARS Endoscope. Biomedical Optics Express, 13, 862–864 (2022).
Plichta T, Zahradnicek R, Cech V. Surface topography affects the nanoindentation data. Thin Solid Films, 745, 139105 (2022).
2021
Plichta T, Širjovová V, Zvonek M, Kalinka G, Čech V. The Adhesion of Plasma Nanocoatings Controls the Shear Properties of GF/Polyester Composite. Polymers, 13, 593 (2021).
Ozbakir Y, Jonas A, Kiraz A, Erkey C. An aerogel-based photocatalytic microreactor driven by light guiding for degradation of toxic pollutants. Chemical Engineering Journal, 409, 128108 (2021).
Askari M, Kirkpatrick BC, Čižmár T, Di Falco A. All-optical manipulation of photonic membranes. Opt. Express, 29, 14260–14268 (2021).
Li S, Saunders C, Lum DJ, Murray-Bruce J, Goyal VK, Cizmar T, Phillips DB. Compressively sampling the optical transmission matrix of a multimode fibre. LIGHT-SCIENCE & APPLICATIONS, 10, 88 (2021).
Tučková T, Šiler M, Flaes DEBoonzajer, Jákl P, Turtaev S, Krátký S, Heintzmann R, Uhlířová H, Čižmár T. Computational image enhancement of multimode fibre-based holographic endo-microscopy: harnessing the muddy modes. Opt. Express, 29, 38206–38220 (2021).
Li S, Horsley SAR, Tyc T, Cizmar T, Phillips DB. Memory effect assisted imaging through multimode optical fibres. Nature Communications, 12, 3751 (2021).
Leite IT, Turtaev S, Flaes DEBoonzaj, Čižmár T. Observing distant objects with a multimode fiber-based holographic endoscope. APL Photonics, 6, 036112 (2021).
Jonas A, Pilát Z, Ježek J, Bernatová S, Jedlička P, Aas M, Kiraz A, Zemánek P. Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field. ACS Applied Materials & Interfaces, 13, 50657−50667 (2021).
Cifuentes A, Pikálek T, Ondráčková P, Amezcua-Correa R, Antonio-Lopez JEnrique, Cizmar T, Trägårdh J. Polarization-resolved second-harmonic generation imaging through a multimode fiber. Optica, 8, 1065–1074 (2021).

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