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2023
Pořízka P, Brunnbauer L, Porkert M, Rozman U, Marolt G, Holub D, Kizovský M, Benešová M, Samek O, Limbeck A, Kaiser J, Kalčíková G. Laser-based techniques: Novel tools for the identification and characterization of aged microplastics with developed biofilm. Chemosphere, 313, 137373 (2023).
2022
Hrabina J, Hosek M, Rerucha S, Cizek M, Pilat Z, Zucco M, Lazar J, Cip O. Absolute frequencies of H13C14N hydrogen cyanide transitions in the 1.5-µm region with the saturated spectroscopy and a sub-kHz scanning laser. Opt. Lett., 47, 5704–5707 (2022).
Arita Y, Bruce GD, Wright EM, Simpson SH, Zemánek P, Dholakia K. All-optical sub-Kelvin sympathetic cooling of a levitated microsphere in vacuum. Optica, 9, 1000–1002 (2022).
Violi IL, Martinez LP, Barella M, Zaza C, Chvátal L, Zemánek P, Gutierrez MV, Paredes MY, Scarpettini AF, Olmos-Trigo J, Pais VR, Noblega IDiaz, Cortès E, Saenz JJose, Bragas AV, Gargiulo J, Stefani FD. Challenges on optical printing of colloidal nanoparticles. J. Chem. Phys., 156, 034201 (2022).
Jákl P, Šiler M, Ježek J, Cifuentes A, Trägårdh J, Zemánek P, Cizmar T. Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References. Photonics, 9, 37 (2022).
Mouralova K, Michna S, Zahradnicek R, Bednar J, Plichta T, Fries J. Experimental analysis of microhardness changes of subsurface areas affected by WEDM. Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering, 236, 1979-1991 (2022).
Meixner K, Daffert C, Dalnodar D, Mrazova K, Hrubanová K, Krzyzanek V, Nebesářová J, Samek O, Sedrlova Z, Slaninová E, Sedláček P, Obruča S, Fritz I. Glycogen, poly(3-hydroxybutyrate) and pigment accumulation in three Synechocystis strains when exposed to a stepwise increasing salt stress. JOURNAL OF APPLIED PHYCOLOGY, 34, 1227-1241 (2022).
Būtaitė UG, Kupianskyi H, Cizmar T, Phillips DB. How to Build the ``Optical Inverse'' of a Multimode Fibre. Intelligent Computing, 2022, 9816026 (2022).
Du Y, Turtaev S, Leite IT, Lorenz A, Kobelke J, Wondraczek K, Čižmár T. Hybrid multimode - multicore fibre based holographic endoscope for deep-tissue neurophotonics. Light: Advanced Manufacturing, 3, 1 (2022).
Karalko A, Kesa P, Jelinek F, Sefc L, Ježek J, Zemánek P, Grus T. In Vivo Contrast Imaging of Rat Heart with Carbon Dioxide Foam. SENSORS, 22, 5124 (2022).
Cifuentes A, Trägårdh J. A method for single particle tracking through a multimode fiber. Opt. Express, 30, 36055–36064 (2022).
Gomes AD, Turtaev S, Du Y, Čižmár T. Near perfect focusing through multimode fibres. Opt. Express, 30, 10645–10663 (2022).
Abdelfattah A, Ahuja S, Akkin T, Allu SRao, Boas DA, Brake J, Buckley EM, Campbell RE, Chen AI, Cheng X, Čižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, Khatib MEl, Emiliani V, Fomin-Thunemann N, Fainman Y, Alfonso TFernández, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kiliç K, Lake EMR, Li L, Li T, Mächler P, Mesquita RC, Miller EW, Nadella KMNaga Srini, U. Nägerl V, Nasu Y, Nimmerjahn A, Ondráčková P, Pavone FS, Campos CPerez, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakadžic S, Shoham S, Shroff SN, R. Silver A, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhlířová H, Xu C, Yang C, Yang M-H, Yellen G, Yizhar O, Zhao Y. Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics, 9, (2022).
Holub D, Pořízka P, Kizovský M, Prochazka D, Samek O, Kaiser J. The potential of combining laser-induced breakdown spectroscopy and Raman spectroscopy data for the analysis of wood samples. Spectrochimica Acta Part B: Atomic Spectroscopy, 195, 106487 (2022).
Mouralova K, Bednar J, Benes L, Plichta T, Prokes T, Fries J. Production of precision slots in copper foil using micro EDM. Scientific Reports, 12, 5023 (2022).
Rebrošová K, Samek O, Kizovský M, Bernatová S, Holá V, Růžička F. Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 12, 866463 (2022).
Rebrošová K, Bernatová S, Šiler M, Uhlirova M, Samek O, Ježek J, Holá V, Růžička F, Zemánek P. Raman spectroscopy—a tool for rapid differentiation among microbes causing urinary tract infections. Analytica Chimica Acta, 1191, 339292 (2022).
Gigan S, Katz O, de Aguiar HB, Andresen ERavn, Aubry A, Bertolotti J, Bossy E, Bouchet D, Brake J, Brasselet S, Bromberg Y, Cao H, Chaigne T, Cheng Z, Choi W, Čižmár T, Cui M, Curtis VR, Defienne H, Hofer M, Horisaki R, Horstmeyer R, Ji N, LaViolette AK, Mertz J, Moser C, Mosk AP, Pégard NC, Piestun R, Popoff S, Phillips DB, Psaltis D, Rahmani B, Rigneault H, Rotter S, Tian L, Vellekoop IM, Waller L, Wang L, Weber T, Xiao S, Xu C, Yamilov A, Yang C, Yılmaz H. Roadmap on wavefront shaping and deep imaging in complex media. Journal of Physics: Photonics, 4, 042501 (2022).
Novackova I, Hrabalova V, Slaninova E, Sedlacek P, Samek O, Koller M, Krzyzanek V, Hrubanova K, Mrazova K, Nebesarova J, Obruca S. The role of polyhydroxyalkanoates in adaptation of Cupriavidus necator to osmotic pressure and high concentration of copper ions. International Journal of Biological Macromolecules, 206, 977-989 (2022).
Pikálek T, Stibůrek M, Simpson S, Cizmar T, Trägårdh J. Suppression of the Non-Linear Background in a Multimode Fibre CARS Endoscope. Biomedical Optics Express, 13, 862–864 (2022).
Plichta T, Zahradnicek R, Cech V. Surface topography affects the nanoindentation data. Thin Solid Films, 745, 139105 (2022).
2021
Plichta T, Širjovová V, Zvonek M, Kalinka G, Čech V. The Adhesion of Plasma Nanocoatings Controls the Shear Properties of GF/Polyester Composite. Polymers, 13, 593 (2021).
Ozbakir Y, Jonas A, Kiraz A, Erkey C. An aerogel-based photocatalytic microreactor driven by light guiding for degradation of toxic pollutants. Chemical Engineering Journal, 409, 128108 (2021).
Askari M, Kirkpatrick BC, Čižmár T, Di Falco A. All-optical manipulation of photonic membranes. Opt. Express, 29, 14260–14268 (2021).
Li S, Saunders C, Lum DJ, Murray-Bruce J, Goyal VK, Cizmar T, Phillips DB. Compressively sampling the optical transmission matrix of a multimode fibre. LIGHT-SCIENCE & APPLICATIONS, 10, 88 (2021).
Tučková T, Šiler M, Flaes DEBoonzajer, Jákl P, Turtaev S, Krátký S, Heintzmann R, Uhlířová H, Čižmár T. Computational image enhancement of multimode fibre-based holographic endo-microscopy: harnessing the muddy modes. Opt. Express, 29, 38206–38220 (2021).
Li S, Horsley SAR, Tyc T, Cizmar T, Phillips DB. Memory effect assisted imaging through multimode optical fibres. Nature Communications, 12, 3751 (2021).
Leite IT, Turtaev S, Flaes DEBoonzaj, Čižmár T. Observing distant objects with a multimode fiber-based holographic endoscope. APL Photonics, 6, 036112 (2021).
Jonas A, Pilát Z, Ježek J, Bernatová S, Jedlička P, Aas M, Kiraz A, Zemánek P. Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field. ACS Applied Materials & Interfaces, 13, 50657−50667 (2021).
Cifuentes A, Pikálek T, Ondráčková P, Amezcua-Correa R, Antonio-Lopez JEnrique, Cizmar T, Trägårdh J. Polarization-resolved second-harmonic generation imaging through a multimode fiber. Optica, 8, 1065–1074 (2021).
Samek O, Bernatová S, Dohnal F. The potential of SERS as an AST methodology in clinical settings. NANOPHOTONICS, 10, 2537-2561 (2021).
Kizovský M, Pilát Z, Mylenko M, Hrouzek P, Kuta J, Skoupý R, Krzyžánek V, Hrubanová K, Adamczyk O, Ježek J, Bernatová S, Klementová T, Gjevik A, Šiler M, Samek O, Zemánek P. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors, 11, 115 (2021).
Bernatová S, Rebrošová K, Pilát Z, Šerý M, Gjevik A, Samek O, Ježek J, Šiler M, Kizovský M, Klementová T, Holá V, Růžička F, Zemánek P. Rapid detection of antibiotic sensitivity of Staphylococcus aureus by Raman tweezers. Eur. Phys. J. Plus, 136, 233 (2021).
Silveira BM, Pikálek T, Stibůrek M, Ondráčková P, Jákl P, Leite IT, Čižmár T. Side-view holographic endomicroscopy via a custom-terminated multimode fibre. Opt. Express, 29, 23083–23095 (2021).
Svak V, Flajšmanová J, Chvátal L, Šiler M, Jonáš A, Ježek J, Simpson SH, Zemánek P, Brzobohatý O. Stochastic dynamics of optically bound matter levitated in vacuum. Optica, 8, 220–229 (2021).
Simpson SH, Arita Y, Dholakia K, Zemánek P. Stochastic Hopf bifurcations in vacuum optical tweezers. Phys. Rev. A, 104, 043518 (2021).
Rudolf B, Du Y, Turtaev S, Leite IT, Čižmár T. Thermal stability of wavefront shaping using a DMD as a spatial light modulator. Opt. Express, 29, 41808–41818 (2021).
Flaes DBoonzajer, Štolzová H, Čižmár T. Time-averaged image projection through a multimode fiber. Opt. Express, 29, 28005–28020 (2021).
Stellinga D, Phillips DB, Mekhail SPeter, Selyem A, Turtaev S, Čižmár T, Padgett MJ. Time-of-flight 3D imaging through multimode optical fibers. Science, 374, 1395-1399 (2021).
Polimeno P, Iati MA, C. Boschi DEsposti, Simpson SH, Svak V, Brzobohatý O, Zemánek P, Marago OM, Saija R. T-matrix calculations of spin-dependent optical forces in optically trapped nanowires. The European Physical Journal - Plus, 136, 86 (2021).
Němcová A, Gonová D, Samek O, Sipiczki M, Breierová E, Márová I. The Use of Raman Spectroscopy to Monitor Metabolic Changes in Stressed Metschnikowia sp. Yeasts. Microorganisms, 9, 277 (2021).
Němcová A, Szotkowski M, Samek O, Cagáňová L, Sipiczki M, Márová I. Use of Waste Substrates for the Lipid Production by Yeasts of the Genus Metschnikowia—Screening Study. Microorganisms, 9, 2295 (2021).
2020
Pilát Z, Jonáš A, Pilátová J, Klementová T, Bernatová S, Šiler M, Maňka T, Kizovský M, Růžička F, Panůček R, Neugebauer U, Samek O, Zemánek P. Analysis of bacteriophage-host interaction by Raman tweezers. Analytical Chemistry, 92, 12304–12311 (2020).
Reversat A, Gaertner F, Merrin J, Stopp J, Tasciyan S, Aguilera J, de Vries I, Hauschild R, Hons M, Piel M, Callan-Jones A, Voituriez R, Sixt M. Cellular locomotion using environmental topography. Nature, 582, 582–585 (2020).
Arita Y, Simpson SH, Zemánek P, Dholakia K. Coherent oscillations of a levitated birefringent microsphere in vacuum driven by nonconservative rotation-translation coupling. Science Advances, 6, (2020).
Brzobohatý O, Chvátal L, Šiler M, Zemánek P. Complex colloidal structures with non-linear optical properties formed in an optical trap. Opt. Express, 28, 37700–37707 (2020).
Box SJ, Allen MP, Phillips DB, Simpson SH. Entropy Production in an Elementary, Light Driven Micro-Machine. Frontiers in Physics, 8, 538 (2020).
Valero AC, Kislov D, Gurvitz EA, Shamkhi HK, Pavlov AA, Redka D, Yankin S, Zemánek P, Shalin AS. Nanovortex-driven all-dielectric optical diffusion boosting and sorting concept for lab-on-a-chip platforms. Advanced Science, 7, (2020).
Rehman AU, Coskun UC, Rashid Z, Morova B, Jonáš A, Erten A, Kiraz A. Size-based sorting of emulsion droplets in microfluidic channels patterned with laser-ablated guiding tracks. Analytical Chemistry, 92, 2597–2604 (2020).
Flajšmanová J, Šiler M, Jedlička P, Hrubý F, Brzobohatý O, Filip R, Zemánek P. Using the transient trajectories of an optically levitated nanoparticle to characterize a stochastic Duffing oscillator. Scientific Reports, 10, 14436 (2020).

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