Publications

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Filtry: Autor je Šiler, Martin  [Clear All Filters]
2023
110 mu m thin endo-microscope for deep-brain in vivo observations of neuronal connectivity, activity and blood flow dynamics. NATURE COMMUNICATIONS, 14, 1897 (2023).
Koch SMarie, Freidank-Pohl C, Siontas O, Cortesao M, Mota A, Runzheimer K, Jung S, Rebrošová K, Šiler M, Moeller R, Meyer V. Aspergillus niger as a cell factory for the production of pyomelanin, a molecule with UV-C radiation shielding activity. Frontiers in Microbiology, 14, (2023).
Siems K, Runzheimer K, Rebrošová K, Etzbach L, Auerhammer A, Rehm A, Schwengers O, Šiler M, Samek O, Růžička F, Moeller R. Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis. Frontiers in Microbiology, 14, (2023).
Benešová M, Bernatová S, Mika F, Pokorná Z, Ježek J, Šiler M, Samek O, Růžička F, Rebrošová K, Zemánek P, Pilát Z. SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering. Biosensors, 13, 182 (2023).
Brzobohatý O, Duchaň M, Jákl P, Ježek J, Šiler M, Zemánek P, Simpson SH. Synchronization of spin-driven limit cycle oscillators optically levitated in vacuum. Nature Communications, 14, 5441 (2023).
2022
Jákl P, Šiler M, Ježek J, Cifuentes A, Trägårdh J, Zemánek P, Cizmar T. Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References. Photonics, 9, 37 (2022).
2021
Kizovský M, Pilát Z, Mylenko M, Hrouzek P, Kuta J, Skoupý R, Krzyžánek V, Hrubanová K, Adamczyk O, Ježek J, Bernatová S, Klementová T, Gjevik A, Šiler M, Samek O, Zemánek P. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors, 11, 115 (2021).
2020
Flajšmanová J, Šiler M, Jedlička P, Hrubý F, Brzobohatý O, Filip R, Zemánek P. Using the transient trajectories of an optically levitated nanoparticle to characterize a stochastic Duffing oscillator. Scientific Reports, 10, 14436 (2020).
2019
Rebrošová K, Šiler M, Samek O, Růžička F, Bernatová S, Ježek J, Zemánek P, Holá V. Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy. Future Microbiology, 14, 509-517 (2019).
Tunable Soft-Matter Optofluidic Waveguides Assembled by Light. ACS Phot., 6, 403-410 (2019).
2018
Pilát Z, Kizovský M, Ježek J, Krátký S, Sobota J, Šiler M, Samek O, Buryška T, Vaňáček P, Damborský J, Prokop Z, Zemánek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).
Šiler M, Ornigotti L, Brzobohatý O, Jákl P, Ryabov A, Holubec V, Zemánek P, Filip R. Diffusing up the Hill: Dynamics and Equipartition in Highly Unstable Systems. Phys. Rev. Lett., 121, 23601 (2018).
Leite IT, Turtaev S, Jiang X, Šiler M, Cuschieri A, Russell PSt. J, Čižmár T. Three-dimensional holographic optical manipulation through a high-numerical-aperture soft-glass multimode fibre. Nature Photon., 12, 33–39 (2018).
Transverse spin forces and non-equilibrium particle dynamics in a circularly polarized vacuum optical trap. Nature Commun., 9, 5453 (2018).
2017
Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology, 12, 10 (2017).
Dynamics of an optically bound structure made of particles of unequal sizes. Opt. Lett., 42, 1436-1439 (2017).
Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 23, S1 (2017).
Rapid identification of staphylococci by Raman spectroscopy. Sci. Rep., 7, 14846 (2017).
Thermally induced micro-motion by inflection in optical potential. Sci. Rep., 7, 1697 (2017).
2016
Direct measurement of the temperature profile close to an optically trapped absorbing particle. Opt. Lett., 41, 870-873 (2016).
Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry. Journal of Optics, 18, 065402 (2016).
Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16. Sensors, 16, 1808 (2016).
2015
Baránek M, Bouchal P, Šiler M, Bouchal Z. Aberration resistant axial localization using a self-imaging of vortices. Opt. Express, 23, 15316–15331 (2015).
Complex rotational dynamics of multiple spheroidal particles in a circularly polarized, dual beam trap. Opt. Express, 23, 7273-7287 (2015).
Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria. Microscopy and Microanalysis, 21, 183-184 (2015).
Identification of individual biofilm-forming bacterial cells using Raman tweezers. J. Biomed. Opt., 20, (2015).
Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy. Sensors, 15, 29635-29647 (2015).
Non-spherical gold nanoparticles trapped in optical tweezers: shape matters. Opt. Express, 23, 8179-8189 (2015).
Optical trapping in secondary maxima of focused laser beam. J. Quant. Spectrosc. Radiat. Transf., 162, 114 - 121 (2015).
Three-Dimensional Optical Trapping of a Plasmonic Nanoparticle using Low Numerical Aperture Optical Tweezers. Sci. Rep., 5, 8106 (2015).
2014
Candida parapsilosis Biofilm Identification by Raman Spectroscopy. Int. J. Mol. Sci., 15, 23924-23935 (2014).
Optical sorting of nonspherical and living microobjects in moving interference structures. Opt. Express, 22, 29746-29760 (2014).
2013
Experimental demonstration of optical transport, sorting and self-arrangement using a `tractor beam'. Nature Photon., 7, 123-127 (2013).
Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).
Metallic nanoparticles in a standing wave: optical force and heating. J. Quant. Spectrosc. Radiat. Transf., 126, 84-90 (2013).
Optical forces in a non-diffracting vortex beam. J. Quant. Spectrosc. Radiat. Transf., 126, 78-83 (2013).
Optical manipulation of aerosol droplets using a holographic dual and single beam trap. Opt. Lett., 38, 4601-4604 (2013).
2012
Šiler M, Jákl P, Brzobohatý O, Zemánek P. Optical forces induced behavior of a particle in a non-diffracting vortex beam. Opt. Express, 20, 24304-24319 (2012).
Šiler M, Čižmár T, Zemánek P. Speed enhancement of multi-particle chain in a traveling standing wave. Appl. Phys. Lett., 100, 051103 (2012).
2011
Šiler M, Zemánek P. Parametric study of optical forces acting upon nanoparticles in a single, or a standing, evanescent wave. J. Opt., 13, 044016:1–9 (2011).
Brzobohatý O, Karásek V, Šiler M, Trojek J, Zemánek P. Static and dynamic behavior of two optically bound microparticles in a standing wave. Opt. Express, 19, 19613–19626 (2011).
2010
Brzobohatý O, Čižmár T, Karásek V, Šiler M, Dholakia K, Zemánek P. Experimental and theoretical determination of optical binding forces. Opt. Express, 18, 25389–25402 (2010).
Šiler M, Zemánek P. Particle jumps between optical traps in a one-dimensional optical lattice. New. J. Phys., 12, 083001:1–20 (2010).
2008
Šiler M, Čižmár T, Jonáš A, Zemánek P. Surface delivery of a single nanoparticle under moving evanescent standing-wave illumination. New. J. Phys., 10, 113010 (2008).
2007
Šiler M, Zemánek P. Optical forces acting on a nanoparticle placed into an interference evanescent field. Opt. Commun., 275, 409–420 (2007).
2006
Šiler M, Čižmár T, Šerý M, Zemánek P. Optical forces generated by evanescent standing waves and their usage for sub-micron particle delivery. Appl. Phys. B, 84, 157–165 (2006).
Čižmár T, Šiler M, Zemánek P. An optical nanotrap array movable over a milimetre range. Appl. Phys. B, 84, 197–203 (2006).
Čižmár T, Šiler M, Šerý M, Zemánek P, Garcés-Chávez V, Dholakia K. Optical sorting and detection of sub-micron objects in a motional standing wave. Phys. Rev. B, 74, 035105:1-6 (2006).