Publications

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2023
Stibůrek M, Ondráčková P, Tuckova T, Turtaev S, Šiler M, Pikálek T, Jákl P, Gomes A, Krejci J, Kolbabkova P, Uhlirova H, Cizmar T. 110 mu m thin endo-microscope for deep-brain in vivo observations of neuronal connectivity, activity and blood flow dynamics. NATURE COMMUNICATIONS, 14, 1897 (2023).
Brodský J, Gablech I, Migliaccio L, Havli'cek M, Donahue MJJ, Glowacki EDD. Downsizing the Channel Length of Vertical Organic Electrochemical Transistors. ACS APPLIED MATERIALS & INTERFACES, 15, 27002-27009 (2023).
2022
Jákl P, Šiler M, Ježek J, Cifuentes A, Trägårdh J, Zemánek P, Cizmar T. Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References. Photonics, 9, 37 (2022).
Būtaitė UG, Kupianskyi H, Cizmar T, Phillips DB. How to Build the ``Optical Inverse'' of a Multimode Fibre. Intelligent Computing, 2022, 9816026 (2022).
Du Y, Turtaev S, Leite IT, Lorenz A, Kobelke J, Wondraczek K, Čižmár T. Hybrid multimode - multicore fibre based holographic endoscope for deep-tissue neurophotonics. Light: Advanced Manufacturing, 3, 1 (2022).
Cifuentes A, Trägårdh J. A method for single particle tracking through a multimode fiber. Opt. Express, 30, 36055–36064 (2022).
Gomes AD, Turtaev S, Du Y, Čižmár T. Near perfect focusing through multimode fibres. Opt. Express, 30, 10645–10663 (2022).
Abdelfattah A, Ahuja S, Akkin T, Allu SRao, Boas DA, Brake J, Buckley EM, Campbell RE, Chen AI, Cheng X, Čižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, Khatib MEl, Emiliani V, Fomin-Thunemann N, Fainman Y, Alfonso TFernández, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kiliç K, Lake EMR, Li L, Li T, Mächler P, Mesquita RC, Miller EW, Nadella KMNaga Srini, U. Nägerl V, Nasu Y, Nimmerjahn A, Ondráčková P, Pavone FS, Campos CPerez, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakadžic S, Shoham S, Shroff SN, R. Silver A, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhlířová H, Xu C, Yang C, Yang M-H, Yellen G, Yizhar O, Zhao Y. Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics, 9, (2022).
Rebrošová K, Bernatová S, Šiler M, Uhlirova M, Samek O, Ježek J, Holá V, Růžička F, Zemánek P. Raman spectroscopy—a tool for rapid differentiation among microbes causing urinary tract infections. Analytica Chimica Acta, 1191, 339292 (2022).
Gigan S, Katz O, de Aguiar HB, Andresen ERavn, Aubry A, Bertolotti J, Bossy E, Bouchet D, Brake J, Brasselet S, Bromberg Y, Cao H, Chaigne T, Cheng Z, Choi W, Čižmár T, Cui M, Curtis VR, Defienne H, Hofer M, Horisaki R, Horstmeyer R, Ji N, LaViolette AK, Mertz J, Moser C, Mosk AP, Pégard NC, Piestun R, Popoff S, Phillips DB, Psaltis D, Rahmani B, Rigneault H, Rotter S, Tian L, Vellekoop IM, Waller L, Wang L, Weber T, Xiao S, Xu C, Yamilov A, Yang C, Yılmaz H. Roadmap on wavefront shaping and deep imaging in complex media. Journal of Physics: Photonics, 4, 042501 (2022).
Pikálek T, Stibůrek M, Simpson S, Cizmar T, Trägårdh J. Suppression of the Non-Linear Background in a Multimode Fibre CARS Endoscope. Biomedical Optics Express, 13, 862–864 (2022).
2021
Askari M, Kirkpatrick BC, Čižmár T, Di Falco A. All-optical manipulation of photonic membranes. Opt. Express, 29, 14260–14268 (2021).
Li S, Saunders C, Lum DJ, Murray-Bruce J, Goyal VK, Cizmar T, Phillips DB. Compressively sampling the optical transmission matrix of a multimode fibre. LIGHT-SCIENCE & APPLICATIONS, 10, 88 (2021).
Tučková T, Šiler M, Flaes DEBoonzajer, Jákl P, Turtaev S, Krátký S, Heintzmann R, Uhlířová H, Čižmár T. Computational image enhancement of multimode fibre-based holographic endo-microscopy: harnessing the muddy modes. Opt. Express, 29, 38206–38220 (2021).
Li S, Horsley SAR, Tyc T, Cizmar T, Phillips DB. Memory effect assisted imaging through multimode optical fibres. Nature Communications, 12, 3751 (2021).
Leite IT, Turtaev S, Flaes DEBoonzaj, Čižmár T. Observing distant objects with a multimode fiber-based holographic endoscope. APL Photonics, 6, 036112 (2021).
Cifuentes A, Pikálek T, Ondráčková P, Amezcua-Correa R, Antonio-Lopez JEnrique, Cizmar T, Trägårdh J. Polarization-resolved second-harmonic generation imaging through a multimode fiber. Optica, 8, 1065–1074 (2021).
Bernatová S, Rebrošová K, Pilát Z, Šerý M, Gjevik A, Samek O, Ježek J, Šiler M, Kizovský M, Klementová T, Holá V, Růžička F, Zemánek P. Rapid detection of antibiotic sensitivity of Staphylococcus aureus by Raman tweezers. Eur. Phys. J. Plus, 136, 233 (2021).
Silveira BM, Pikálek T, Stibůrek M, Ondráčková P, Jákl P, Leite IT, Čižmár T. Side-view holographic endomicroscopy via a custom-terminated multimode fibre. Opt. Express, 29, 23083–23095 (2021).
Rudolf B, Du Y, Turtaev S, Leite IT, Čižmár T. Thermal stability of wavefront shaping using a DMD as a spatial light modulator. Opt. Express, 29, 41808–41818 (2021).
Flaes DBoonzajer, Štolzová H, Čižmár T. Time-averaged image projection through a multimode fiber. Opt. Express, 29, 28005–28020 (2021).
Stellinga D, Phillips DB, Mekhail SPeter, Selyem A, Turtaev S, Čižmár T, Padgett MJ. Time-of-flight 3D imaging through multimode optical fibers. Science, 374, 1395-1399 (2021).
2020
Pilát Z, Jonáš A, Pilátová J, Klementová T, Bernatová S, Šiler M, Maňka T, Kizovský M, Růžička F, Panůček R, Neugebauer U, Samek O, Zemánek P. Analysis of bacteriophage-host interaction by Raman tweezers. Analytical Chemistry, 92, 12304–12311 (2020).
Reversat A, Gaertner F, Merrin J, Stopp J, Tasciyan S, Aguilera J, de Vries I, Hauschild R, Hons M, Piel M, Callan-Jones A, Voituriez R, Sixt M. Cellular locomotion using environmental topography. Nature, 582, 582–585 (2020).
Box SJ, Allen MP, Phillips DB, Simpson SH. Entropy Production in an Elementary, Light Driven Micro-Machine. Frontiers in Physics, 8, 538 (2020).
2019
Rebrošová K, Šiler M, Samek O, Růžička F, Bernatová S, Ježek J, Zemánek P, Holá V. Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy. Future Microbiology, 14, 509-517 (2019).
Trägårdh J, Pikálek T, Šerý M, Meyer T, Popp J, Čižmár T. Label-free CARS microscopy through a multimode fiber endoscope. Opt. Express, 27, 30055–30066 (2019).
Plidschun M, Weidlich S, Šiler M, Weber K, Čižmár T, Schmidt MA. Nanobore fiber focus trap with enhanced tuning capabilities. Opt. Express, 27, 36221–36230 (2019).
Pikálek T, Trägårdh J, Simpson S, Čižmár T. Wavelength dependent characterization of a multimode fibre endoscope. Opt. Express, 27, 28239–28253 (2019).
2018
Turtaev S, Leite IT, Altwegg-Boussac T, Pakan JMP, Rochefort NL, Čižmár T. High-fidelity multimode fibre-based endoscopy for deep brain in vivo imaging. Light: Sci. Appl., 7, 92 (2018).
Flaes DEB, Stopka J, Turtaev S, de Boer JF, Tyc T, Čižmár T. Robustness of Light-Transport Processes to Bending Deformations in Graded-Index Multimode Waveguides. Phys. Rev. Lett., 120, 233901:1-5 (2018).
Vasquez-Lopez SA, Turcotte R, Koren V, Ploschner M, Padamsey Z, Booth M, Čižmár T, Emptage NJ. Subcellular spatial resolution achieved for deep-brain imaging in vivo using a minimally invasive multimode fiber. Light: Sci. Appl., 7, 110 (2018).
Leite IT, Turtaev S, Jiang X, Šiler M, Cuschieri A, Russell PSt. J, Čižmár T. Three-dimensional holographic optical manipulation through a high-numerical-aperture soft-glass multimode fibre. Nature Photon., 12, 33–39 (2018).