Publications

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Filtry: Autor je Samek, Ota and Klíčové Slovo is BF  [Clear All Filters]
2025
Laznicka T, Kizovský M, Hrubanová K, Ježek J, Mrazova K, Obruča S, Samek O, Krzyžánek V. Assembly for semi-correlation analysis of samples using cryogenic scanning electron microscopy and cryogenic Raman micro-spectroscopy. MEASUREMENT SCIENCE AND TECHNOLOGY, 36, 055903 (2025).
Ghazalova M, Modlitbova P, Samek O, Rebrošová K, Šiler M, Ježek J, Pilát Z. Surface-Enhanced Raman Spectroscopy for Adenine Detection in Five Selected Bacterial Strains Under Stress Conditions. SENSORS, 25, 4629 (2025).
2024
Lee KSoo, Landry Z, Athar A, Alcolombri U, Ayutthaya PPramoj Na, Berry D, de Bettignies P, Cheng J-X, Csucs G, Cui L, Deckert V, Dieing T, Dionne J, Doskocil O, D'Souza G, Garcia-Timermans C, Gierlinger N, Goda K, Hatzenpichler R, Henshaw RJ, Huang WE, Iermak I, Ivleva NP, Kneipp J, Kubryk P, Kuesel K, Lee TKwon, Lee SSik, Ma B, Martinez-Perez C, Matousek P, Meckenstock RU, Min W, Mojzes P, Mueller O, Kumar N, Nielsen PHalkjaer, Notingher I, Palatinszky M, Pereira FC, Pezzotti G, Pilát Z, Plesinger F, Popp J, Probst AJ, Riva A, Saleh AAE, Samek O, Sapers HM, Schubert OT, Stubbusch AKM, Tadesse LF, Taylor GT, Wagner M, Wang J, Yin H, Yue Y, Zenobi R, Zini J, Sarkans U, Stocker R. MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. NATURE MICROBIOLOGY, 9, (2024).
Khan A, Qadeer A, Wajid A, Ullah Q, Rahman SUr, Ullah K, Safi SZaman, Ticha L, Skalickova S, Chilala P, Bernatová S, Samek O, Horky P. Microplastics in animal nutrition: Occurrence, spread, and hazard in animals. JOURNAL OF AGRICULTURE AND FOOD RESEARCH, 17, 101258 (2024).
2023
Siems K, Runzheimer K, Rebrošová K, Etzbach L, Auerhammer A, Rehm A, Schwengers O, Šiler M, Samek O, Růžička F, Moeller R. Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis. Frontiers in Microbiology, 14, (2023).
Benešová M, Bernatová S, Mika F, Pokorná Z, Ježek J, Šiler M, Samek O, Růžička F, Rebrošová K, Zemánek P, Pilát Z. SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering. Biosensors, 13, 182 (2023).
2022
Rebrošová K, Samek O, Kizovský M, Bernatová S, Holá V, Růžička F. Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 12, 866463 (2022).
2021
Samek O, Bernatová S, Dohnal F. The potential of SERS as an AST methodology in clinical settings. NANOPHOTONICS, 10, 2537-2561 (2021).
Kizovský M, Pilát Z, Mylenko M, Hrouzek P, Kuta J, Skoupý R, Krzyžánek V, Hrubanová K, Adamczyk O, Ježek J, Bernatová S, Klementová T, Gjevik A, Šiler M, Samek O, Zemánek P. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors, 11, 115 (2021).
Němcová A, Gonová D, Samek O, Sipiczki M, Breierová E, Márová I. The Use of Raman Spectroscopy to Monitor Metabolic Changes in Stressed Metschnikowia sp. Yeasts. Microorganisms, 9, 277 (2021).
Němcová A, Szotkowski M, Samek O, Cagáňová L, Sipiczki M, Márová I. Use of Waste Substrates for the Lipid Production by Yeasts of the Genus Metschnikowia—Screening Study. Microorganisms, 9, 2295 (2021).
2019
Rebrošová K, Šiler M, Samek O, Růžička F, Bernatová S, Ježek J, Zemánek P, Holá V. Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy. Future Microbiology, 14, 509-517 (2019).
Bernatová S, Donato MGrazia, Ježek J, Pilát Z, Samek O, Magazzu A, Maragò OM, Zemánek P, Gucciardi PG. Wavelength-Dependent Optical Force Aggregation of Gold Nanorods for SERS in a Microfluidic Chip. J. Phys. Chem. C, 123, 5608-5615 (2019).
Sedláček P, Slaninová E, Enev V, Koller M, Nebesářová J, Márová I, Hrubanová K, Krzyžánek V, Samek O, Obruča S. What keeps polyhydroxyalkanoates in bacterial cells amorphous? A derivation from stress exposure experiments. Appl. Microbiol. Biotech., 103, 1905-1917 (2019).
2018
Procházka D, Mazura M, Samek O, Rebrošová K, Pořízka P, Klus J, Procházková P, Novotný J, Novotný K, Kaiser J. Combination of laser-induced breakdown spectroscopy and Raman spectroscopy for multivariate classification of bacteria. Spec. Acta Part B, 139, 6-12 (2018).
Pilát Z, Kizovský M, Ježek J, Krátký S, Sobota J, Šiler M, Samek O, Buryška T, Vaňáček P, Damborský J, Prokop Z, Zemánek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).
Pilát Z, Bernatová S, Ježek J, Kirchhoff J, Tannert A, Neugebauer U, Samek O, Zemánek P. Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress. Sensors, 18, 1623 (2018).
Hrubanová K, Krzyžánek V, Nebesářová J, Růžička F, Pilát Z, Samek O. Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy. Sensors, 18, 4089 (2018).
2017
Rebrošová K, Šiler M, Samek O, Růžička F, Bernatová S, Ježek J, Zemánek P, Holá V. Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology, 12, 10 (2017).
Hrubanová K, Krzyžánek V, Samek O, Skoupý R, Šiler M, Ježek J, Obruča S, Zemánek P. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 23, S1 (2017).
Obruča S, Sedláček P, Mravec F, Krzyžánek V, Nebesářová J, Samek O, Kučera D, Benešová P, Hrubanová K, Milerová M, Márová I. The presence of PHB granules in cytoplasm protects non-halophilic bacterial cells against the harmful impact of hypertonic environments. New Biotechnol., 39, 10 (2017).
Rebrošová K, Šiler M, Samek O, Růžička F, Bernatová S, Holá V, Ježek J, Zemánek P, Sokolová J, Petráš P. Rapid identification of staphylococci by Raman spectroscopy. Sci. Rep., 7, 14846 (2017).