Publications

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Filtry: Klíčové Slovo je MF and Autor is Pavel Zemánek  [Clear All Filters]
2024
Maňka T, Šiler M, Liška V, Zemánek P, Šerý M, Brzobohatý O. Simulation of optomechanical interaction of levitated nanoparticle with photonic crystal micro cavity. Opt. Express, 32, 7185–7196 (2024).
2023
Liška V, Zemánková T, Svak V, Jákl P, Ježek J, Bránecký M, Simpson SH, Zemánek P, Brzobohatý O. Cold damping of levitated optically coupled nanoparticles. Optica, 10, 1203–1209 (2023).
Arita Y, Simpson SH, Bruce GD, Wright EM, Zemánek P, Dholakia K. Cooling the optical-spin driven limit cycle oscillations of a levitated gyroscope. Commun. Phys., 6, 238 (2023).
Tarbajova V, Kolackova M, Chaloupsky P, Dobesova M, Capal P, Pilat Z, Samek O, Zemánek P, Svec P, Sterbova DSkopalova, Vaculovicova M, Richtera L, Pérez-de-Mora A, Adam V, Huska D. Physiological and transcriptome profiling of Chlorella sorokiniana: A study on azo dye wastewater decolorization. Journal of Hazardous Materials, 460, 132450 (2023).
Rebrošová K, Bernatová S, Šiler M, Mašek J, Samek O, Ježek J, Kizovský M, Holá V, Zemánek P, Růžička F. Rapid Identification of Pathogens Causing Bloodstream Infections by Raman Spectroscopy and Raman Tweezers. Microbiology Spectrum, 11, e00028-23 (2023).
Vaculík O, Bernatová S, Rebrošová K, Samek O, Šilhan L, žička FRů, Šerý M, Šiler M, ek JJež, Zemánek P. Rapid identification of pathogens in blood serum via Raman tweezers in combination with advanced processing methods. Biomed. Opt. Express, 14, 6410–6421 (2023).
Volpe G, Maragò OM, Rubinsztein-Dunlop H, Pesce G, Stilgoe AB, Volpe G, Tkachenko G, Truong VGiang, Chormaic SNic, Kalantarifard F, Elahi P, Käll M, Callegari A, Marqués MI, Neves AAR, Moreira WL, Fontes A, Cesar CL, Saija R, Saidi A, Beck P, Eismann JS, Banzer P, Fernandes TFD, Pedaci F, Bowen WP, Vaippully R, Lokesh M, Roy B, Thalhammer-Thurner G, Ritsch-Marte M, García LPérez, Arzola AV, Castillo IPérez, Argun A, Muenker TM, Vos BE, Betz T, Cristiani I, Minzioni P, Reece PJ, Wang F, McGloin D, Ndukaife JC, Quidant R, Roberts RP, Laplane C, Volz T, Gordon R, Hanstorp D, Marmolejo JTello, Bruce GD, Dholakia K, Li T, Brzobohatý O, Simpson SH, Zemánek P, Ritort F, Roichman Y, Bobkova V, Wittkowski R, Denz C, Kumar GVPavan, Foti A, Donato MGrazia, Gucciardi PG, Gardini L, Bianchi G, Kashchuk AV, Capitanio M, Paterson L, Jones PH, Berg-Sørensen K, Barooji YF, Oddershede LB, Pouladian P, Preece D, Adiels CBeck, De Luca AChiara, Magazzù A, Ciriza DBronte, Iatì MAntonia, Swartzlander GA. Roadmap for optical tweezers. Journal of Physics: Photonics, 5, 022501 (2023).
2022
Arita Y, Bruce GD, Wright EM, Simpson SH, Zemánek P, Dholakia K. All-optical sub-Kelvin sympathetic cooling of a levitated microsphere in vacuum. Optica, 9, 1000–1002 (2022).
Rebrošová K, Bernatová S, Šiler M, Uhlirova M, Samek O, Ježek J, Holá V, Růžička F, Zemánek P. Raman spectroscopy—a tool for rapid differentiation among microbes causing urinary tract infections. Analytica Chimica Acta, 1191, 339292 (2022).
2021
Svak V, Flajšmanová J, Chvátal L, Šiler M, Jonáš A, Ježek J, Simpson SH, Zemánek P, Brzobohatý O. Stochastic dynamics of optically bound matter levitated in vacuum. Optica, 8, 220–229 (2021).
2020
Brzobohatý O, Chvátal L, Šiler M, Zemánek P. Complex colloidal structures with non-linear optical properties formed in an optical trap. Opt. Express, 28, 37700–37707 (2020).
2019
Donato MG, Brzobohatý O, Simpson SH, Irrera A, Leonardi AA, Faro MJLo, Svak V, Maragò OM, Zemánek P. Optical Trapping, Optical Binding, and Rotational Dynamics of Silicon Nanowires in Counter-Propagating Beams. Nano Lett., 19, 342-352 (2019).
Brzobohatý O, Chvátal L, Zemánek P. Optomechanical properties of optically self-arranged colloidal waveguides. Opt. Lett., 44, 707-710 (2019).
Zemánek P, Volpe G, Jonáš A, Brzobohatý O. Perspective on light-induced transport of particles: from optical forces to phoretic motion. Adv. Opt. Photon., 11, 577–678 (2019).
Arzola AV, Chvátal L, Jákl P, Zemánek P. Spin to orbital light momentum conversion visualized by particle trajectory. Sci. Rep., 9, 4127:1-7 (2019).
Brzobohatý O, Chvátal L, Jonáš A, Šiler M, Kaňka J, Ježek J, Zemánek P. Tunable Soft-Matter Optofluidic Waveguides Assembled by Light. ACS Phot., 6, 403-410 (2019).
2018
Pilát Z, Kizovský M, Ježek J, Krátký S, Sobota J, Šiler M, Samek O, Buryška T, Vaňáček P, Damborský J, Prokop Z, Zemánek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).
Šiler M, Ornigotti L, Brzobohatý O, Jákl P, Ryabov A, Holubec V, Zemánek P, Filip R. Diffusing up the Hill: Dynamics and Equipartition in Highly Unstable Systems. Phys. Rev. Lett., 121, 23601 (2018).
Damková J, Chvátal L, Ježek J, Oulehla J, Brzobohatý O, Zemánek P. Enhancement of the `tractor-beam' pulling force on an optically bound structure. Light: Sci. Appl., 7, 17135 (2018).
Pilát Z, Bernatová S, Ježek J, Kirchhoff J, Tannert A, Neugebauer U, Samek O, Zemánek P. Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress. Sensors, 18, 1623 (2018).
Svak V, Brzobohatý O, Šiler M, Jákl P, Kaňka J, Zemánek P, Simpson SH. Transverse spin forces and non-equilibrium particle dynamics in a circularly polarized vacuum optical trap. Nature Commun., 9, 5453 (2018).
2017
Gargiulo J, Violi IL, Cerrota S, Chvátal L, Cortès E, Perassi EM, Diaz F, Zemánek P, Stefani FD. Accuracy and Mechanistic Details of Optical Printing of Single Au and Ag Nanoparticles. ACS nano, 11, 9678–9688 (2017).
Rebrošová K, Šiler M, Samek O, Růžička F, Bernatová S, Ježek J, Zemánek P, Holá V. Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology, 12, 10 (2017).
Karásek V, Šiler M, Brzobohatý O, Zemánek P. Dynamics of an optically bound structure made of particles of unequal sizes. Opt. Lett., 42, 1436-1439 (2017).
Pilát Z, Jonáš A, Ježek J, Zemánek P. Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System. Sensors, 17, 2640 (2017).
Hrubanová K, Krzyžánek V, Samek O, Skoupý R, Šiler M, Ježek J, Obruča S, Zemánek P. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 23, S1 (2017).
Arzola AV, Villasante-Barahona M, Volke-Sepúlveda K, Jákl P, Zemánek P. Omnidirectional Transport in Fully Reconfigurable Two Dimensional Optical Ratchets. Phys. Rev. Lett., 118, 138002 (2017).
Simpson SH, Zemánek P, Maragò OM, Jones PH, Hanna S. Optical Binding of Nanowires. Nano Lett., 17, 3485-3492 (2017).
Rebrošová K, Šiler M, Samek O, Růžička F, Bernatová S, Holá V, Ježek J, Zemánek P, Sokolová J, Petráš P. Rapid identification of staphylococci by Raman spectroscopy. Sci. Rep., 7, 14846 (2017).
Jonáš A, Pilát Z, Ježek J, Bernatová S, Fořt T, Zemánek P, Aas M, Kiraz A. Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators. J. Opt. Soc. Am. B, 34, 1855-1864 (2017).
Šiler M, Jákl P, Brzobohatý O, Ryabov A, Filip R, Zemánek P. Thermally induced micro-motion by inflection in optical potential. Sci. Rep., 7, 1697 (2017).
2016
Brzobohatý O, Hernandez RJosue, Simpson SH, Mazzulla A, Cipparrone G, Zemánek P. Chiral particles in the dual-beam optical trap. Opt. Express, 24, 26382-26391 (2016).
Šiler M, Ježek J, Jákl P, Pilát Z, Zemánek P. Direct measurement of the temperature profile close to an optically trapped absorbing particle. Opt. Lett., 41, 870-873 (2016).
Tomori Z, Keša P, Nikorovič M, Kaňka J, Jákl P, Šerý M, Bernatová S, Valušová E, Antalík M, Zemánek P. Holographic Raman tweezers controlled by Multimodal Natural User Interface. J. Opt., 18, 015602:1-9 (2016).
Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 22, S3 (2016).
Filip R, Zemánek P. Noise-to-signal transition of a Brownian particle in the cubic potential: I. general theory. Journal of Optics, 18, 065401 (2016).
Zemánek P, Šiler M, Brzobohatý O, Jákl P, Filip R. Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry. Journal of Optics, 18, 065402 (2016).
Samek O, Obruča S, Šiler M, Sedláček P, Benešová P, Kučera D, Márová I, Ježek J, Bernatová S, Zemánek P. Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16. Sensors, 16, 1808 (2016).
Simpson SH, Chvátal L, Zemánek P. Synchronization of colloidal rotors through angular optical binding. Phys. Rev. A, 93, 023842 (2016).
Ryabov A, Zemánek P, Filip R. Thermally-induced passage and current of particles in highly unstable optical potential. Phys. Rev.E, 16, 042108 (2016).
2015
Chvátal L, Brzobohatý O, Zemánek P. Binding of a pair of Au nanoparticles in a wide Gaussian standing wave. Opt. Rev., 22, 157-161 (2015).
Brzobohatý O, Arzola AV, Šiler M, Chvátal L, Jákl P, Simpson SH, Zemánek P. Complex rotational dynamics of multiple spheroidal particles in a circularly polarized, dual beam trap. Opt. Express, 23, 7273-7287 (2015).
Krzyžánek V, Hrubanová K, Samek O, Obruča S, Márová I, Bernatová S, Šiler M, Zemánek P. Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria. Microscopy and Microanalysis, 21, 183-184 (2015).
Samek O, Bernatová S, Ježek J, Šiler M, Šerý M, Krzyžánek V, Hrubanová K, Zemánek P, Holá V, Růžička F. Identification of individual biofilm-forming bacterial cells using Raman tweezers. J. Biomed. Opt., 20, (2015).
Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy. Sensors, 15, 29635-29647 (2015).
Hrubanová K, Bernatová S, Samek O, Šerý M, Zemánek P, Nebesářová J, Růžička F, Krzyžánek V. Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements. Microscopy and Microanalysis, 21, 187-188 (2015).
Brzobohatý O, Šiler M, Trojek J, Chvátal L, Karásek V, Zemánek P. Non-spherical gold nanoparticles trapped in optical tweezers: shape matters. Opt. Express, 23, 8179-8189 (2015).
Šiler M, Zemánek P. Optical trapping in secondary maxima of focused laser beam. J. Quant. Spectrosc. Radiat. Transf., 162, 114 - 121 (2015).
SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry. Microscopy and Microanalysis, 21, 1775-1776 (2015).
Brzobohatý O, Šiler M, Trojek J, Chvátal L, Karásek V, Paták A, Pokorná Z, Mika F, Zemánek P. Three-Dimensional Optical Trapping of a Plasmonic Nanoparticle using Low Numerical Aperture Optical Tweezers. Sci. Rep., 5, 8106 (2015).

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