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Lee KSoo, Landry Z, Athar A, Alcolombri U, Ayutthaya PPramoj Na, Berry D, de Bettignies P, Cheng J-X, Csucs G, Cui L, Deckert V, Dieing T, Dionne J, Doskocil O, D'Souza G, Garcia-Timermans C, Gierlinger N, Goda K, Hatzenpichler R, Henshaw RJ, Huang WE, Iermak I, Ivleva NP, Kneipp J, Kubryk P, Kuesel K, Lee TKwon, Lee SSik, Ma B, Martinez-Perez C, Matousek P, Meckenstock RU, Min W, Mojzes P, Mueller O, Kumar N, Nielsen PHalkjaer, Notingher I, Palatinszky M, Pereira FC, Pezzotti G, Pilát Z, Plesinger F, Popp J, Probst AJ, Riva A, Saleh AAE, Samek O, Sapers HM, Schubert OT, Stubbusch AKM, Tadesse LF, Taylor GT, Wagner M, Wang J, Yin H, Yue Y, Zenobi R, Zini J, Sarkans U, Stocker R. MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. NATURE MICROBIOLOGY, 9, (2024).

Khan A, Qadeer A, Wajid A, Ullah Q, Rahman SUr, Ullah K, Safi SZaman, Ticha L, Skalickova S, Chilala P, Bernatová S, Samek O, Horky P. Microplastics in animal nutrition: Occurrence, spread, and hazard in animals. JOURNAL OF AGRICULTURE AND FOOD RESEARCH, 17, 101258 (2024).

Parobková V, Holub D, Kizovský M, Kal?íková G, Rozman U, Urík M, Novotný K, Samek O, Zikmund T, Po?ízka P, Kaiser J. Raman microspectroscopy and laser-induced breakdown spectroscopy for the analysis of polyethylene microplastics in human soft tissues. Heliyon, 10, e37844 (2024).

Naz S, Chatha AManan Must, Khan NAhmed, Ullah Q, Zaman F, Qadeer A, Khan IMuhammad, Danabas D, Kiran A, Skalickova S, Bernatová S, Khan MZahoor, Horky P. Unraveling the ecotoxicological effects of micro and nano-plastics on aquatic organisms and human health. Frontiers in Environmental Science, 12, (2024).

Koch SMarie, Freidank-Pohl C, Siontas O, Cortesao M, Mota A, Runzheimer K, Jung S, Rebro?ová K, ?iler M, Moeller R, Meyer V. Aspergillus niger as a cell factory for the production of pyomelanin, a molecule with UV-C radiation shielding activity. Frontiers in Microbiology, 14, (2023).

Siems K, Runzheimer K, Rebro?ová K, Etzbach L, Auerhammer A, Rehm A, Schwengers O, ?iler M, Samek O, R??i?ka F, Moeller R. Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis. Frontiers in Microbiology, 14, (2023).

Po?ízka P, Brunnbauer L, Porkert M, Rozman U, Marolt G, Holub D, Kizovský M, Bene?ová M, Samek O, Limbeck A, Kaiser J, Kal?íková G. Laser-based techniques: Novel tools for the identification and characterization of aged microplastics with developed biofilm. Chemosphere, 313, 137373 (2023).

Tarbajova V, Kolackova M, Chaloupsky P, Dobesova M, Capal P, Pilat Z, Samek O, Zemánek P, Svec P, Sterbova DSkopalova, Vaculovicova M, Richtera L, Pérez-de-Mora A, Adam V, Huska D. Physiological and transcriptome profiling of Chlorella sorokiniana: A study on azo dye wastewater decolorization. Journal of Hazardous Materials, 460, 132450 (2023).

Rebro?ová K, Bernatová S, ?iler M, Ma?ek J, Samek O, Je?ek J, Kizovský M, Holá V, Zemánek P, R??i?ka F. Rapid Identification of Pathogens Causing Bloodstream Infections by Raman Spectroscopy and Raman Tweezers. Microbiology Spectrum, 11, e00028-23 (2023).

Vaculík O, Bernatová S, Rebro?ová K, Samek O, ?ilhan L, ?i?ka FR?, ?erý M, ?iler M, ek JJe?, Zemánek P. Rapid identification of pathogens in blood serum via Raman tweezers in combination with advanced processing methods. Biomed. Opt. Express, 14, 6410?6421 (2023).

Bene?ová M, Bernatová S, Mika F, Pokorná Z, Je?ek J, ?iler M, Samek O, R??i?ka F, Rebro?ová K, Zemánek P, Pilát Z. SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering. Biosensors, 13, 182 (2023).

Hrabina J, Hosek M, Rerucha S, Cizek M, Pilat Z, Zucco M, Lazar J, Cip O. Absolute frequencies of H13C14N hydrogen cyanide transitions in the 1.5-µm region with the saturated spectroscopy and a sub-kHz scanning laser. Opt. Lett., 47, 5704?5707 (2022).

Jákl P, ?iler M, Je?ek J, Cifuentes A, Trägårdh J, Zemánek P, Cizmar T. Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References. Photonics, 9, 37 (2022).

Meixner K, Daffert C, Dalnodar D, Mrazova K, Hrubanová K, Krzyzanek V, Nebesá?ová J, Samek O, Sedrlova Z, Slaninová E, Sedlá?ek P, Obru?a S, Fritz I. Glycogen, poly(3-hydroxybutyrate) and pigment accumulation in three Synechocystis strains when exposed to a stepwise increasing salt stress. JOURNAL OF APPLIED PHYCOLOGY, 34, 1227-1241 (2022).

Karalko A, Kesa P, Jelinek F, Sefc L, Je?ek J, Zemánek P, Grus T. In Vivo Contrast Imaging of Rat Heart with Carbon Dioxide Foam. SENSORS, 22, 5124 (2022).

Holub D, Po?ízka P, Kizovský M, Prochazka D, Samek O, Kaiser J. The potential of combining laser-induced breakdown spectroscopy and Raman spectroscopy data for the analysis of wood samples. Spectrochimica Acta Part B: Atomic Spectroscopy, 195, 106487 (2022).

Rebro?ová K, Samek O, Kizovský M, Bernatová S, Holá V, R??i?ka F. Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 12, 866463 (2022).

Rebro?ová K, Bernatová S, ?iler M, Uhlirova M, Samek O, Je?ek J, Holá V, R??i?ka F, Zemánek P. Raman spectroscopy?a tool for rapid differentiation among microbes causing urinary tract infections. Analytica Chimica Acta, 1191, 339292 (2022).

Novackova I, Hrabalova V, Slaninova E, Sedlacek P, Samek O, Koller M, Krzyzanek V, Hrubanova K, Mrazova K, Nebesarova J, Obruca S. The role of polyhydroxyalkanoates in adaptation of Cupriavidus necator to osmotic pressure and high concentration of copper ions. International Journal of Biological Macromolecules, 206, 977-989 (2022).

Jonas A, Pilát Z, Je?ek J, Bernatová S, Jedli?ka P, Aas M, Kiraz A, Zemánek P. Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field. ACS Applied Materials & Interfaces, 13, 50657?50667 (2021).

Samek O, Bernatová S, Dohnal F. The potential of SERS as an AST methodology in clinical settings. NANOPHOTONICS, 10, 2537-2561 (2021).

Kizovský M, Pilát Z, Mylenko M, Hrouzek P, Kuta J, Skoupý R, Krzy?ánek V, Hrubanová K, Adamczyk O, Je?ek J, Bernatová S, Klementová T, Gjevik A, ?iler M, Samek O, Zemánek P. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors, 11, 115 (2021).

Bernatová S, Rebro?ová K, Pilát Z, ?erý M, Gjevik A, Samek O, Je?ek J, ?iler M, Kizovský M, Klementová T, Holá V, R??i?ka F, Zemánek P. Rapid detection of antibiotic sensitivity of Staphylococcus aureus by Raman tweezers. Eur. Phys. J. Plus, 136, 233 (2021).

N?mcová A, Gonová D, Samek O, Sipiczki M, Breierová E, Márová I. The Use of Raman Spectroscopy to Monitor Metabolic Changes in Stressed Metschnikowia sp. Yeasts. Microorganisms, 9, 277 (2021).

N?mcová A, Szotkowski M, Samek O, Cagá?ová L, Sipiczki M, Márová I. Use of Waste Substrates for the Lipid Production by Yeasts of the Genus Metschnikowia?Screening Study. Microorganisms, 9, 2295 (2021).

Pilát Z, Joná? A, Pilátová J, Klementová T, Bernatová S, ?iler M, Ma?ka T, Kizovský M, R??i?ka F, Pan??ek R, Neugebauer U, Samek O, Zemánek P. Analysis of bacteriophage-host interaction by Raman tweezers. Analytical Chemistry, 92, 12304?12311 (2020).

Bury?ka T, Va?ina M, Gielen F, Va?á?ek P, van Vliet L, Je?ek J, Pilát Z, Zemánek P, Damborský J, Hollfelder F, Prokop Z. Controlled Oil/Water Partitioning of Hydrophobic Substrates Extending the Bioanalytical Applications of Droplet-Based Microfluidics. Anal. Chem., 91, 10008-10015 (2019).

Pavloková S, Mu?elík J, Sabadková D, Bernatová S, Samek O, Neumann D, Franc A. The effects of the treatment conditions on the dissolution profile of ethylcellulose coated pellets. Europ. J. of Pharmaceutical Sci., 132, 86-95 (2019).

Rebro?ová K, ?iler M, Samek O, R??i?ka F, Bernatová S, Je?ek J, Zemánek P, Holá V. Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy. Future Microbiology, 14, 509-517 (2019).

Bernatová S, Donato MGrazia, Je?ek J, Pilát Z, Samek O, Magazzu A, Maragò OM, Zemánek P, Gucciardi PG. Wavelength-Dependent Optical Force Aggregation of Gold Nanorods for SERS in a Microfluidic Chip. J. Phys. Chem. C, 123, 5608-5615 (2019).

Sedlá?ek P, Slaninová E, Enev V, Koller M, Nebesá?ová J, Márová I, Hrubanová K, Krzy?ánek V, Samek O, Obru?a S. What keeps polyhydroxyalkanoates in bacterial cells amorphous? A derivation from stress exposure experiments. Appl. Microbiol. Biotech., 103, 1905-1917 (2019).

Procházka D, Mazura M, Samek O, Rebro?ová K, Po?ízka P, Klus J, Procházková P, Novotný J, Novotný K, Kaiser J. Combination of laser-induced breakdown spectroscopy and Raman spectroscopy for multivariate classification of bacteria. Spec. Acta Part B, 139, 6-12 (2018).

Pilát Z, Kizovský M, Je?ek J, Krátký S, Sobota J, ?iler M, Samek O, Bury?ka T, Va?á?ek P, Damborský J, Prokop Z, Zemánek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).

Pilát Z, Bernatová S, Je?ek J, Kirchhoff J, Tannert A, Neugebauer U, Samek O, Zemánek P. Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress. Sensors, 18, 1623 (2018).

Hrubanová K, Krzy?ánek V, Nebesá?ová J, R??i?ka F, Pilát Z, Samek O. Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy. Sensors, 18, 4089 (2018).

Ozbakir Y, Joná? A, Kiraz A, Erkey C. A new type of microphotoreactor with integrated optofluidic waveguide based on solid-air nanoporous aerogels. Royal Society Open Science, 5, 180802 (2018).

Rashid Z, Joná? A, Buczynski R, Kiraz A. Optofluidic Dye Lasers Based on Holey Fibers: Modeling and PerformanceAnalysis. J. Lightwave. Technol., 36, 4114-4122 (2018).

Rashid Z, Atay I, Soydan S, M. Yagci B, Joná? A, Yilgor E, Kiraz A, Yilgor I. Reversible switching of wetting properties and erasable patterning of polymer surfaces using plasma oxidation and thermal treatment. Appl. Surf. Sci., 441, 841-852 (2018).

Baloch SKhan, Joná? A, Kiraz A, B. Alaca E, Erkey C. Sensitivity of compositional measurement of high-pressure fluid mixtures using microcantilever frequency response. Sensors Actuators A, 278, 111-126 (2018).

Rebro?ová K, ?iler M, Samek O, R??i?ka F, Bernatová S, Je?ek J, Zemánek P, Holá V. Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology, 12, 10 (2017).

Pilát Z, Joná? A, Je?ek J, Zemánek P. Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System. Sensors, 17, 2640 (2017).

Hrubanová K, Krzy?ánek V, Samek O, Skoupý R, ?iler M, Je?ek J, Obru?a S, Zemánek P. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 23, S1 (2017).

Obru?a S, Sedlá?ek P, Mravec F, Krzy?ánek V, Nebesá?ová J, Samek O, Ku?era D, Bene?ová P, Hrubanová K, Milerová M, Márová I. The presence of PHB granules in cytoplasm protects non-halophilic bacterial cells against the harmful impact of hypertonic environments. New Biotechnol., 39, 10 (2017).

Rebro?ová K, ?iler M, Samek O, R??i?ka F, Bernatová S, Holá V, Je?ek J, Zemánek P, Sokolová J, Petrá? P. Rapid identification of staphylococci by Raman spectroscopy. Sci. Rep., 7, 14846 (2017).

Joná? A, Pilát Z, Je?ek J, Bernatová S, Fo?t T, Zemánek P, Aas M, Kiraz A. Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators. J. Opt. Soc. Am. B, 34, 1855-1864 (2017).