Arita Y, Bruce GD, Wright EM, Simpson SH, Zemánek P, Dholakia K. All-optical sub-Kelvin sympathetic cooling of a levitated microsphere in vacuum. Optica, 9, 1000?1002 (2022).

Pilát Z, Joná? A, Pilátová J, Klementová T, Bernatová S, ?iler M, Ma?ka T, Kizovský M, R??i?ka F, Pan??ek R, Neugebauer U, Samek O, Zemánek P. Analysis of bacteriophage-host interaction by Raman tweezers. Analytical Chemistry, 92, 12304?12311 (2020).

Arita Y, Simpson SH, Zemánek P, Dholakia K. Coherent oscillations of a levitated birefringent microsphere in vacuum driven by nonconservative rotation-translation coupling. Science Advances, 6, (2020).

Valero AC, Kislov D, Gurvitz EA, Shamkhi HK, Pavlov AA, Redka D, Yankin S, Zemánek P, Shalin AS. Nanovortex-driven all-dielectric optical diffusion boosting and sorting concept for lab-on-a-chip platforms. Advanced Science, 7, (2020).

Donato MG, Brzobohatý O, Simpson SH, Irrera A, Leonardi AA, Faro MJLo, Svak V, Maragò OM, Zemánek P. Optical Trapping, Optical Binding, and Rotational Dynamics of SiliconNanowires in Counter-Propagating Beams. Nano Lett., 19, 342-352 (2019).

Brzobohatý O, Chvátal L, Zemánek P. Optomechanical properties of optically self-arranged colloidal waveguides. Opt. Lett., 44, 707-710 (2019).

Arzola AV, Chvátal L, Jákl P, Zemánek P. Spin to orbital light momentum conversion visualized by particle trajectory. Sci. Rep., 9, 4127:1-7 (2019).

Brzobohatý O, Chvátal L, Joná? A, ?iler M, Ka?ka J, Je?ek J, Zemánek P. Tunable Soft-Matter Optofluidic Waveguides Assembled by Light. ACS Phot., 6, 403-410 (2019).

Pilát Z, Kizovský M, Je?ek J, Krátký S, Sobota J, ?iler M, Samek O, Bury?ka T, Va?á?ek P, Damborský J, Prokop Z, Zemánek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).

?iler M, Ornigotti L, Brzobohatý O, Jákl P, Ryabov A, Holubec V, Zemánek P, Filip R. Diffusing up the Hill: Dynamics and Equipartition in Highly Unstable Systems. Phys. Rev. Lett., 121, 23601 (2018).

Damková J, Chvátal L, Je?ek J, Oulehla J, Brzobohatý O, Zemánek P. Enhancement of the `tractor-beam' pulling force on an optically bound structure. Light: Sci. Appl., 7, 17135 (2018).

Pilát Z, Bernatová S, Je?ek J, Kirchhoff J, Tannert A, Neugebauer U, Samek O, Zemánek P. Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress. Sensors, 18, 1623 (2018).

Svak V, Brzobohatý O, ?iler M, Jákl P, Ka?ka J, Zemánek P, Simpson SH. Transverse spin forces and non-equilibrium particle dynamics in a circularly polarized vacuum optical trap. Nature Commun., 9, 5453 (2018).

Gargiulo J, Violi IL, Cerrota S, Chvátal L, Cortès E, Perassi EM, Diaz F, Zemánek P, Stefani FD. Accuracy and Mechanistic Details of Optical Printing of Single Au and Ag Nanoparticles. ACS nano, 11, 9678?9688 (2017).

Rebro?ová K, ?iler M, Samek O, R??i?ka F, Bernatová S, Je?ek J, Zemánek P, Holá V. Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology, 12, 10 (2017).

Karásek V, ?iler M, Brzobohatý O, Zemánek P. Dynamics of an optically bound structure made of particles of unequal sizes. Opt. Lett., 42, 1436-1439 (2017).

Pilát Z, Joná? A, Je?ek J, Zemánek P. Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System. Sensors, 17, 2640 (2017).

Hrubanová K, Krzy?ánek V, Samek O, Skoupý R, ?iler M, Je?ek J, Obru?a S, Zemánek P. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 23, S1 (2017).

Arzola AV, Villasante-Barahona M, Volke-Sepúlveda K, Jákl P, Zemánek P. Omnidirectional Transport in Fully Reconfigurable Two Dimensional Optical Ratchets. Phys. Rev. Lett., 118, 138002 (2017).

Simpson SH, Zemánek P, Maragò OM, Jones PH, Hanna S. Optical Binding of Nanowires. Nano Lett., 17, 3485-3492 (2017).

Rebro?ová K, ?iler M, Samek O, R??i?ka F, Bernatová S, Holá V, Je?ek J, Zemánek P, Sokolová J, Petrá? P. Rapid identification of staphylococci by Raman spectroscopy. Sci. Rep., 7, 14846 (2017).

Joná? A, Pilát Z, Je?ek J, Bernatová S, Fo?t T, Zemánek P, Aas M, Kiraz A. Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators. J. Opt. Soc. Am. B, 34, 1855-1864 (2017).

?iler M, Jákl P, Brzobohatý O, Ryabov A, Filip R, Zemánek P. Thermally induced micro-motion by inflection in optical potential. Sci. Rep., 7, 1697 (2017).

Brzobohatý O, Hernandez RJosue, Simpson SH, Mazzulla A, Cipparrone G, Zemánek P. Chiral particles in the dual-beam optical trap. Opt. Express, 24, 26382-26391 (2016).

?iler M, Je?ek J, Jákl P, Pilát Z, Zemánek P. Direct measurement of the temperature profile close to an optically trapped absorbing particle. Opt. Lett., 41, 870-873 (2016).

Tomori Z, Ke?a P, Nikorovi? M, Ka?ka J, Jákl P, ?erý M, Bernatová S, Valu?ová E, Antalík M, Zemánek P. Holographic Raman tweezers controlled by Multimodal Natural User Interface. J. Opt., 18, 015602:1-9 (2016).

Hrubanová K, Samek O, Haroniková A, Bernatová S, Zemánek P, Márová I, Krzy?ánek V. Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 22, S3 (2016).

Filip R, Zemánek P. Noise-to-signal transition of a Brownian particle in the cubic potential: I. general theory. Journal of Optics, 18, 065401 (2016).

Zemánek P, ?iler M, Brzobohatý O, Jákl P, Filip R. Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry. Journal of Optics, 18, 065402 (2016).

Samek O, Obru?a S, ?iler M, Sedlá?ek P, Bene?ová P, Ku?era D, Márová I, Je?ek J, Bernatová S, Zemánek P. Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16. Sensors, 16, 1808 (2016).

Simpson SH, Chvátal L, Zemánek P. Synchronization of colloidal rotors through angular optical binding. Phys. Rev. A, 93, 023842 (2016).

Ryabov A, Zemánek P, Filip R. Thermally-induced passage and current of particles in highly unstable optical potential. Phys. Rev.E, 16, 042108 (2016).

Chvátal L, Brzobohatý O, Zemánek P. Binding of a pair of Au nanoparticles in a wide Gaussianstanding wave. Opt. Rev., 22, 157-161 (2015).

Brzobohatý O, Arzola AV, ?iler M, Chvátal L, Jákl P, Simpson SH, Zemánek P. Complex rotational dynamics of multiple spheroidalparticles in a circularly polarized, dual beam trap. Opt. Express, 23, 7273-7287 (2015).

Krzy?ánek V, Hrubanová K, Samek O, Obru?a S, Márová I, Bernatová S, ?iler M, Zemánek P. Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria. Microscopy and Microanalysis, 21, 183-184 (2015).

Samek O, Bernatová S, Je?ek J, ?iler M, ?erý M, Krzy?ánek V, Hrubanová K, Zemánek P, Holá V, R??i?ka F. Identification of individual biofilm-forming bacterial cells using Raman tweezers. J. Biomed. Opt., 20, (2015).

Mlynariková K, Samek O, Bernatová S, R??i?ka F, Je?ek J, Haroniková A, ?iler M, Zemánek P, Holá V. Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy. Sensors, 15, 29635-29647 (2015).

Hrubanová K, Bernatová S, Samek O, ?erý M, Zemánek P, Nebesá?ová J, R??i?ka F, Krzy?ánek V. Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements. Microscopy and Microanalysis, 21, 187-188 (2015).

Brzobohatý O, ?iler M, Trojek J, Chvátal L, Karásek V, Zemánek P. Non-spherical gold nanoparticles trapped in optical tweezers: shape matters. Opt. Express, 23, 8179-8189 (2015).

?iler M, Zemánek P. Optical trapping in secondary maxima of focused laser beam. J. Quant. Spectrosc. Radiat. Transf., 162, 114 - 121 (2015).

Samek O, Haroniková A, Va?kovicová N, Hrubanová K, Je?ek J, Márová I, Krzy?ánek V, Zemánek P. SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry. Microscopy and Microanalysis, 21, 1775-1776 (2015).

Brzobohatý O, ?iler M, Trojek J, Chvátal L, Karásek V, Paták A, Pokorná Z, Mika F, Zemánek P. Three-Dimensional Optical Trapping of a Plasmonic Nanoparticle using Low Numerical Aperture Optical Tweezers. Sci. Rep., 5, 8106 (2015).

Po?ízka P, Procházková P, Procházka D, Sládková L, Novotný J, Petrilak M, Brada M, Samek O, Pilát Z, Zemánek P, Adam V, Kizek R, Novotný J, Kaiser J. Algal Biomass Analysis by Laser-Based Analytical Techniques?A Review. Sensors, 14, 17725-17752 (2014).

Samek O, Mlynariková K, Bernatová S, Je?ek J, Krzy?ánek V, ?iler M, Zemánek P, R??i?ka F, Holá V, Mahelová M. Candida parapsilosis Biofilm Identification by RamanSpectroscopy. Int. J. Mol. Sci., 15, 23924-23935 (2014).

Jákl P, Arzola AV, ?iler M, Chvátal L, Volke-Sepúlveda K, Zemánek P. Optical sorting of nonspherical and living microobjects in moving interference structures. Opt. Express, 22, 29746-29760 (2014).

Arzola AV, Jákl P, Chvátal L, Zemánek P. Rotation, oscillation and hydrodynamic synchronization of optically trapped oblate spheroidal microparticles. Opt. Express, 22, 16207-16221 (2014).

Brzobohatý O, Karásek V, ?iler M, Chvátal L, ?i?már T, Zemánek P. Experimental demonstration of optical transport, sorting and self-arrangement using a `tractor beam'. Nature Photon., 7, 123-127 (2013).

Bernatová S, Samek O, Pilát Z, ?erý M, Je?ek J, Jákl P, ?iler M, Krzy?ánek V, Zemánek P, Holá V, Dvo?á?ková M, R??i?ka F. Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).

Tomori Z, Antalík M, Ke?a P, Ka?ka J, Jákl P, ?erý M, Bernatová S, Zemánek P. Holographic Raman tweezers controlled by hand gestures and voice commands. Optics and Photonics Journal, 3, 331-336 (2013).

?iler M, Chvátal L, Zemánek P. Metallic nanoparticles in a standing wave: optical forceand heating. J. Quant. Spectrosc. Radiat. Transf., 126, 84-90 (2013).

?iler M, Zemánek P. Optical forces in a non-diffracting vortex beam. J. Quant. Spectrosc. Radiat. Transf., 126, 78-83 (2013).

Brzobohatý O, ?iler M, Je?ek J, Jákl P, Zemánek P. Optical manipulation of aerosol droplets using aholographic dual and single beam trap. Opt. Lett., 38, 4601-4604 (2013).

Pilát Z, Je?ek J, ?erý M, Trtílek M, Nedbal L, Zemánek P. Optical trapping of microalgae at 735?1064 nm: Photodamage assessment. J. Photochem. Photobiol. B, 121, 27 - 31 (2013).

Aas M, Joná? A, Kiraz A, Brzobohatý O, Je?ek J, Pilát Z, Zemánek P. Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching. Opt. Express, 21, 21380-21394 (2013).

Po?ízka P, Procházka D, Pilát Z, Kraj?arová L, Kaiser J, Malina R, Novotný J, Zemánek P, Je?ek J, ?erý M, Bernatová S, Krzy?ánek V, Dobranská K, Novotný K, Trtílek M, Samek O. Application of laser-induced breakdown spectroscopy to the analysis ofalgal biomass for industrial biotechnology. Spectrochim. Acta B, 74-75, 169-176 (2012).

Trojek J, Chvátal L, Zemánek P. Optical alignment and confinement of an ellipsoidalnanorod in optical tweezers: a theoretical study. J. Opt. Soc. Am. A, 29, 1224?1236 (2012).

?iler M, Jákl P, Brzobohatý O, Zemánek P. Optical forces induced behavior of a particle in a non-diffracting vortex beam. Opt. Express, 20, 24304-24319 (2012).

Pilát Z, Bernatová S, Je?ek J, ?erý M, Samek O, Zemánek P, Nedbal L, Trtílek M. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. J. Appl. Phycol., 24, 541-546 (2012).

?iler M, ?i?már T, Zemánek P. Speed enhancement of multi-particle chain in a travelingstanding wave. Appl. Phys. Lett., 100, 051103 (2012).

Samek O, Zemánek P, Joná? A, Telle HH. Characterization of oil-producing microalgae using Raman spectroscopy. Laser Phys. Lett., 8, 701?709 (2011).

Brzobohatý O, Karásek V, ?i?már T, Zemánek P. Dynamic size tuning of multidimensional optically boundmatter. Appl. Phys. Lett., 99, 101105 (2011).

?i?már T, Brzobohatý O, Dholakia K, Zemánek P. The holographic optical micro-manipulation system basedon counter-propagating beams. Laser Phys. Lett., 8, 50?56 (2011).

?iler M, Zemánek P. Parametric study of optical forces acting upon nanoparticles in a single, or a standing, evanescentwave. J. Opt., 13, 044016:1?9 (2011).

Brzobohatý O, Karásek V, ?iler M, Trojek J, Zemánek P. Static and dynamic behavior of two optically boundmicroparticles in a standing wave. Opt. Express, 19, 19613?19626 (2011).

Brzobohatý O, ?i?már T, Karásek V, ?iler M, Dholakia K, Zemánek P. Experimental and theoretical determination of opticalbinding forces. Opt. Express, 18, 25389?25402 (2010).

Dholakia K, Zemánek P. Gripped by light: Optical binding. Rev. Mod. Phys., 82, 1767?1791 (2010).

?iler M, Zemánek P. Particle jumps between optical traps in a one-dimensionaloptical lattice. New. J. Phys., 12, 083001:1?20 (2010).

Samek O, Joná? A, Pilát Z, Zemánek P, Nedbal L, T?íska J, Kotas P, Trtílek M. Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo. Sensors, 10, 8635?8651 (2010).

Trojek J, Karásek V, Zemánek P. Extreme axial optical force in a standing wave achieved by optimized object shape. Opt. Express, 17, 10472?10488 (2009).

Karásek V, Brzobohatý O, Zemánek P. Longitudinal optical binding of several sphericalparticles studied by the coupled dipole method. J. Opt. A: Pure Appl. Opt., 11, 034009 (2009).

Brzobohatý O, ?i?már T, Zemánek P. High quality quasi-Bessel beam generated by round-tipaxicon. Opt. Express, 16, 12688?12700 (2008).

Joná? A, Zemánek P. Light at work: The use of optical forces for particlemanipulation, sorting, and analysis. Electophoresis, 29, 4813?4851 (2008).

Karásek V, ?i?már T, Brzobohatý O, Zemánek P, Garcés-Chávez V, Dholakia K. Long-range one-dimensional longitudinal opticalbinding. Phys. Rev. Lett., 101, 143601 (2008).

Jákl P, ?i?már T, ?erý M, Zemánek P. Static optical sorting in a laser interference field. Appl. Phys. Lett., 92, 161110:1?3 (2008).

?iler M, ?i?már T, Joná? A, Zemánek P. Surface delivery of a single nanoparticle under movingevanescent standing-wave illumination. New. J. Phys., 10, 113010 (2008).

Karásek V, Zemánek P. Analytical description of longitudinal optical binding of two spherical nanoparticles. J. Opt. A: Pure Appl. Opt., 9, S215?S220 (2007).

Jákl P, ?erý M, Je?ek J, Li?ka M, Zemánek P. Axial optical trap stiffness influenced by retro-reflected beam. J. Opt. A: Pure Appl. Opt., 9, S251?S255 (2007).

Dholakia K, MacDonald MP, Zemánek P, ?i?már T. Cellular and colloidal separation using optical forces. Methods in Cell Biology, 82, 467?495 (2007).

?iler M, Zemánek P. Optical forces acting on a nanoparticle placed into an interference evanescent field. Opt. Commun., 275, 409?420 (2007).

?i?már T, Zemánek P. Optical tracking of spherical micro-objects in spatially periodic interference fields. Opt. Express, 15, 2262?2272 (2007).

Jákl P, ?erý M, Je?ek J, Zemánek P, Ormos P, Valkai S, Kelemen L. Opto-fluidic micromanipulation system based on integrated polymer waveguides. J. Optoel Adv. Mater., 9, 2148-2151 (2007).

Milne G, Dholakia K, McGloin D, Volke-Sepúlveda K, Zemánek P. Transverse particle dynamics in a Bessel beam. Opt. Express, 15, 13972?13987 (2007).

Karásek V, Dholakia K, Zemánek P. Analysis of optical binding in one dimension. Appl. Phys. B, 84, 149?156 (2006).

Je?ek J, ?i?már T, Ned?la V, Zemánek P. Formation of long and thin polymer fiber using nondiffracting beam. Opt. Express, 14, 8506-8515 (2006).

?iler M, ?i?már T, ?erý M, Zemánek P. Optical forces generated by evanescent standing waves and their usage for sub-micron particle delivery. Appl. Phys. B, 84, 157?165 (2006).

?i?már T, ?iler M, Zemánek P. An optical nanotrap array movable over a milimetre range. Appl. Phys. B, 84, 197?203 (2006).

?i?már T, ?iler M, ?erý M, Zemánek P, Garcés-Chávez V, Dholakia K. Optical sorting and detection of sub-micron objects in a motional standing wave. Phys. Rev. B, 74, 035105:1-6 (2006).

?i?már T, Kollárová V, Bouchal Z, Zemánek P. Sub-micron particle organization by self-imaging of non-diffracting beams. New. J. Phys., 8, 43 (2006).

?i?már T, Garcés-Chávez V, Dholakia K, Zemánek P. Optical conveyor belt for delivery of submicron objects. Appl. Phys. Lett., 86, 174101-1?174101-3 (2005).

Casaburi A, Pesce G, Zemánek P, Sasso A. Two-and three-beam interferometric optical tweezers. Opt. Commun., 251, 393?404 (2005).

Zemánek P, Karásek V, Sasso A. Optical forces acting on Rayleigh particle placed into interference field. Opt. Commun., 240, 401-415 (2004).

Jákl P, ?erý M, Je?ek J, Joná? A, Li?ka M, Zemánek P. Behaviour of an optically trapped probe approaching a dielectric interface. J Mod. Optics, 50, 1615-1625 (2003).

Zemánek P, Joná? A, Jákl P, ?erý M, Je?ek J, Li?ka M. Theoretical comparison of optical traps created by standing wave and single beam. Opt. Commun., 220, 401-412 (2003).

Zemánek P, Joná? A, Li?ka M. Simplified description of optical forces acting on a nanoparticle in the Gaussian standing wave. J. Opt. Soc. Am. A, 19, 1025-1034 (2002).

Joná? A, Zemánek P, Florin E-L. Single beam trapping in front of reflective surfaces. Opt. Lett., 26, 1466?1468 (2001).

Zemánek P, Joná? A, ?rámek L, Li?ka M. Optical trapping of nanoparticles and microparticles using Gaussian standing wave. Opt. Lett., 24, 1448?1450 (1999).

Zemánek P, Foot CJ. Atomic dipole trap formed by a blue detuned strong Gaussian standing wave. Opt. Commun., 146, 119?123 (1998).

Zemánek P, Joná? A, ?rámek L, Li?ka M. Optical trapping of Rayleigh particles using a Gaussian standing wave. Opt. Commun., 151, 273?285 (1998).