Laznicka T, Kizovský M, Hrubanová K, Je?ek J, Mrazova K, Obru?a S, Samek O, Krzy?ánek V. Assembly for semi-correlation analysis of samples using cryogenic scanning electron microscopy and cryogenic Raman micro-spectroscopy. MEASUREMENT SCIENCE AND TECHNOLOGY, 36, 055903 (2025).

Ghazalova M, Modlitbova P, Samek O, Rebro?ová K, ?iler M, Je?ek J, Pilát Z. Surface-Enhanced Raman Spectroscopy for Adenine Detection in Five Selected Bacterial Strains Under Stress Conditions. SENSORS, 25, 4629 (2025).

Lee KSoo, Landry Z, Athar A, Alcolombri U, Ayutthaya PPramoj Na, Berry D, de Bettignies P, Cheng J-X, Csucs G, Cui L, Deckert V, Dieing T, Dionne J, Doskocil O, D'Souza G, Garcia-Timermans C, Gierlinger N, Goda K, Hatzenpichler R, Henshaw RJ, Huang WE, Iermak I, Ivleva NP, Kneipp J, Kubryk P, Kuesel K, Lee TKwon, Lee SSik, Ma B, Martinez-Perez C, Matousek P, Meckenstock RU, Min W, Mojzes P, Mueller O, Kumar N, Nielsen PHalkjaer, Notingher I, Palatinszky M, Pereira FC, Pezzotti G, Pilát Z, Plesinger F, Popp J, Probst AJ, Riva A, Saleh AAE, Samek O, Sapers HM, Schubert OT, Stubbusch AKM, Tadesse LF, Taylor GT, Wagner M, Wang J, Yin H, Yue Y, Zenobi R, Zini J, Sarkans U, Stocker R. MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. NATURE MICROBIOLOGY, 9, (2024).

Khan A, Qadeer A, Wajid A, Ullah Q, Rahman SUr, Ullah K, Safi SZaman, Ticha L, Skalickova S, Chilala P, Bernatová S, Samek O, Horky P. Microplastics in animal nutrition: Occurrence, spread, and hazard in animals. JOURNAL OF AGRICULTURE AND FOOD RESEARCH, 17, 101258 (2024).

Siems K, Runzheimer K, Rebro?ová K, Etzbach L, Auerhammer A, Rehm A, Schwengers O, ?iler M, Samek O, R??i?ka F, Moeller R. Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis. Frontiers in Microbiology, 14, (2023).

Bene?ová M, Bernatová S, Mika F, Pokorná Z, Je?ek J, ?iler M, Samek O, R??i?ka F, Rebro?ová K, Zemánek P, Pilát Z. SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering. Biosensors, 13, 182 (2023).

Rebro?ová K, Samek O, Kizovský M, Bernatová S, Holá V, R??i?ka F. Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 12, 866463 (2022).

Samek O, Bernatová S, Dohnal F. The potential of SERS as an AST methodology in clinical settings. NANOPHOTONICS, 10, 2537-2561 (2021).

Kizovský M, Pilát Z, Mylenko M, Hrouzek P, Kuta J, Skoupý R, Krzy?ánek V, Hrubanová K, Adamczyk O, Je?ek J, Bernatová S, Klementová T, Gjevik A, ?iler M, Samek O, Zemánek P. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors, 11, 115 (2021).

N?mcová A, Gonová D, Samek O, Sipiczki M, Breierová E, Márová I. The Use of Raman Spectroscopy to Monitor Metabolic Changes in Stressed Metschnikowia sp. Yeasts. Microorganisms, 9, 277 (2021).

N?mcová A, Szotkowski M, Samek O, Cagá?ová L, Sipiczki M, Márová I. Use of Waste Substrates for the Lipid Production by Yeasts of the Genus Metschnikowia?Screening Study. Microorganisms, 9, 2295 (2021).

Rebro?ová K, ?iler M, Samek O, R??i?ka F, Bernatová S, Je?ek J, Zemánek P, Holá V. Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy. Future Microbiology, 14, 509-517 (2019).

Bernatová S, Donato MGrazia, Je?ek J, Pilát Z, Samek O, Magazzu A, Maragò OM, Zemánek P, Gucciardi PG. Wavelength-Dependent Optical Force Aggregation of Gold Nanorods for SERS in a Microfluidic Chip. J. Phys. Chem. C, 123, 5608-5615 (2019).

Sedlá?ek P, Slaninová E, Enev V, Koller M, Nebesá?ová J, Márová I, Hrubanová K, Krzy?ánek V, Samek O, Obru?a S. What keeps polyhydroxyalkanoates in bacterial cells amorphous? A derivation from stress exposure experiments. Appl. Microbiol. Biotech., 103, 1905-1917 (2019).

Procházka D, Mazura M, Samek O, Rebro?ová K, Po?ízka P, Klus J, Procházková P, Novotný J, Novotný K, Kaiser J. Combination of laser-induced breakdown spectroscopy and Raman spectroscopy for multivariate classification of bacteria. Spec. Acta Part B, 139, 6-12 (2018).

Pilát Z, Kizovský M, Je?ek J, Krátký S, Sobota J, ?iler M, Samek O, Bury?ka T, Va?á?ek P, Damborský J, Prokop Z, Zemánek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).

Pilát Z, Bernatová S, Je?ek J, Kirchhoff J, Tannert A, Neugebauer U, Samek O, Zemánek P. Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress. Sensors, 18, 1623 (2018).

Hrubanová K, Krzy?ánek V, Nebesá?ová J, R??i?ka F, Pilát Z, Samek O. Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy. Sensors, 18, 4089 (2018).

Rebro?ová K, ?iler M, Samek O, R??i?ka F, Bernatová S, Je?ek J, Zemánek P, Holá V. Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology, 12, 10 (2017).

Hrubanová K, Krzy?ánek V, Samek O, Skoupý R, ?iler M, Je?ek J, Obru?a S, Zemánek P. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 23, S1 (2017).

Obru?a S, Sedlá?ek P, Mravec F, Krzy?ánek V, Nebesá?ová J, Samek O, Ku?era D, Bene?ová P, Hrubanová K, Milerová M, Márová I. The presence of PHB granules in cytoplasm protects non-halophilic bacterial cells against the harmful impact of hypertonic environments. New Biotechnol., 39, 10 (2017).

Rebro?ová K, ?iler M, Samek O, R??i?ka F, Bernatová S, Holá V, Je?ek J, Zemánek P, Sokolová J, Petrá? P. Rapid identification of staphylococci by Raman spectroscopy. Sci. Rep., 7, 14846 (2017).