@article { BrzobohatyACSPHOT19, title = {Tunable Soft-Matter Optofluidic Waveguides Assembled by Light}, journal = {ACS Phot.}, volume = {6}, year = {2019}, pages = {403-410}, keywords = {LF, MF}, doi = {10.1021/acsphotonics.8b01331}, author = {Oto Brzobohat{\'y} and Luk{\'a}{\v s} Chv{\'a}tal and A. Jon{\'a}{\v s} and M {\v S}iler and J. Ka{\v n}ka and J Je{\v z}ek and P. Zem{\'a}nek} } @article { PilatSENS18SERS, title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips}, journal = {Sensors}, volume = {18}, year = {2018}, pages = {3212}, keywords = {BF, MF}, doi = {10.3390/s18103212}, author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek} } @article { DamkovaLSA18, title = {Enhancement of the {\textquoteleft}tractor-beam{\textquoteright} pulling force on an optically bound structure}, journal = {Light: Sci. Appl.}, volume = {7}, year = {2018}, pages = {17135}, keywords = {LF, MF}, doi = {10.1038/lsa.2017.135}, author = {Damkov{\'a}, Jana and Luk{\'a}{\v s} Chv{\'a}tal and J Je{\v z}ek and Oulehla, Jindrich and Oto Brzobohat{\'y} and P. Zem{\'a}nek} } @article { PilatSENS18Ecoli, title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress}, journal = {Sensors}, volume = {18}, year = {2018}, pages = {1623}, keywords = {BF, MF}, doi = {10.3390/s18051623}, author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and Kirchhoff, J. and Tannert, A. and Neugebauer, U. and O. Samek and P. Zem{\'a}nek} } @article {RebrosovsaFB17, title = {Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy}, journal = {Future Microbiology}, volume = {12}, year = {2017}, pages = {10}, keywords = {BF, MF}, doi = {10.2217/fmb-2016-0224}, author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and Silva Bernatov{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and V. Hol{\'a}} } @article {PilatSENS17, title = {Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System}, journal = {Sensors}, volume = {17}, year = {2017}, pages = {2640}, keywords = {BF, MF}, doi = {10.3390/s17112640}, author = {Z. Pil{\'a}t and A. Jon{\'a}{\v s} and J Je{\v z}ek and P. Zem{\'a}nek} } @article {HrubanovaMM17, title = {Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy}, journal = {Microscopy and Microanalysis}, volume = {23}, year = {2017}, pages = {S1}, keywords = {BF, MF}, doi = {10.1017/S1431927617006456}, author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and R. Skoup{\'y} and M {\v S}iler and J Je{\v z}ek and S. Obru{\v c}a and P. Zem{\'a}nek} } @article {RebrosovaSR17, title = {Rapid identification of staphylococci by Raman spectroscopy}, journal = {Sci. Rep.}, volume = {7}, year = {2017}, pages = {14846}, keywords = {BF, MF}, doi = {10.1038/s41598-017-13940-w}, author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and S. Bernatov{\'a} and V. Hol{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and J. Sokolov{\'a} and P. Petr{\'a}{\v s}} } @article { JonasJOSAB17, title = {Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators}, journal = {J. Opt. Soc. Am. B}, volume = {34}, year = {2017}, pages = {1855-1864}, keywords = {BF, MF}, doi = {10.1364/JOSAB.34.001855}, author = {A. Jon{\'a}{\v s} and Z. Pil{\'a}t and J Je{\v z}ek and Silva Bernatov{\'a} and T. Fo{\v r}t and P. Zem{\'a}nek and Mehdi Aas and Alper Kiraz} } @article { SilerOL16, title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle}, journal = {Opt. Lett.}, volume = {41}, year = {2016}, pages = {870-873}, keywords = {MF}, doi = {10.1364/OL.41.000870}, author = {M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and Z. Pil{\'a}t and P. Zem{\'a}nek} } @article {SamekSENS16, title = {Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16}, journal = {Sensors}, volume = {16}, year = {2016}, pages = {1808}, keywords = {MF}, doi = {10.3390/s16111808}, author = {O. Samek and S. Obru{\v c}a and M {\v S}iler and P. Sedl{\'a}{\v c}ek and Pavla Bene{\v s}ov{\'a} and D. Ku{\v c}era and I. M{\'a}rov{\'a} and J Je{\v z}ek and Silva Bernatov{\'a} and P. Zem{\'a}nek} } @article { SamekJBO15, title = {Identification of individual biofilm-forming bacterial cells using Raman tweezers}, journal = {J. Biomed. Opt.}, volume = {20}, number = {5}, year = {2015}, keywords = {MF}, doi = {10.1117/1.JBO.20.5.051038}, author = {O. Samek and Silva Bernatov{\'a} and J Je{\v z}ek and M {\v S}iler and M. {\v S}er{\'y} and V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and P. Zem{\'a}nek and V. Hol{\'a} and F. R{\r u}{\v z}i{\v c}ka} } @article { MlynarikovaSENS15, title = {Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy}, journal = {Sensors}, volume = {15}, year = {2015}, pages = {29635-29647}, keywords = {MF}, doi = {10.3390/s151129635}, author = {K. Mlynarikov{\'a} and O. Samek and Silva Bernatov{\'a} and F. R{\r u}{\v z}i{\v c}ka and J Je{\v z}ek and A. Haronikov{\'a} and M {\v S}iler and P. Zem{\'a}nek and V. Hol{\'a}} } @article { SamekMM15, title = {SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry}, journal = {Microscopy and Microanalysis}, volume = {21}, year = {2015}, pages = {1775-1776}, keywords = {MF}, doi = {10.1017/S1431927615009654}, author = {O. Samek and A. Haronikov{\'a} and N. Va{\v s}kovicov{\'a} and K. Hrubanov{\'a} and J Je{\v z}ek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek} } @article { SamekIJMC14, title = {Candida parapsilosis Biofilm Identification by Raman Spectroscopy}, journal = {Int. J. Mol. Sci.}, volume = {15}, year = {2014}, pages = {23924-23935}, keywords = {MF}, doi = {10.3390/ijms151223924}, author = {O. Samek and K. Mlynarikov{\'a} and Silva Bernatov{\'a} and J Je{\v z}ek and V. Krzy{\v z}{\'a}nek and M {\v S}iler and P. Zem{\'a}nek and F. R{\r u}{\v z}i{\v c}ka and V. Hol{\'a} and M. Mahelov{\'a}} } @article { BernatovaMol13, title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy}, journal = {Molecules}, volume = {18}, year = {2013}, pages = {13188-13199}, keywords = {MF}, doi = {10.3390/molecules181113188}, author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka} } @article { BrzobohatyOL13, title = {Optical manipulation of aerosol droplets using a holographic dual and single beam trap}, journal = {Opt. Lett.}, volume = {38}, number = {22}, year = {2013}, pages = {4601-4604}, keywords = {MF}, doi = {10.1364/OL.38.004601}, author = {Oto Brzobohat{\'y} and M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and P. Zem{\'a}nek} } @article { PilatJPPB13, title = {Optical trapping of microalgae at 735{\textendash}1064 nm: Photodamage assessment}, journal = {J. Photochem. Photobiol. B}, volume = {121}, year = {2013}, pages = {27 - 31}, keywords = {MF}, doi = {10.1016/j.jphotobiol.2013.02.006}, author = {Z. Pil{\'a}t and J Je{\v z}ek and M. {\v S}er{\'y} and M. Trt{\'\i}lek and L. Nedbal and P. Zem{\'a}nek} } @article {AasOE13, title = {Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching}, journal = {Opt. Express}, volume = {21}, number = {18}, year = {2013}, pages = {21380-21394}, keywords = {MF}, doi = {10.1364/OE.21.021380}, author = {Mehdi Aas and A. Jon{\'a}{\v s} and Alper Kiraz and Oto Brzobohat{\'y} and J Je{\v z}ek and Z. Pil{\'a}t and P. Zem{\'a}nek} } @article {PorizkaSAB12, title = {Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology}, journal = {Spectrochim. Acta B}, volume = {74-75}, year = {2012}, pages = {169-176}, keywords = {MF}, doi = {10.1016/j.sab.2012.06.014}, author = {P. Po{\v r}{\'\i}zka and D. Proch{\'a}zka and Z. Pil{\'a}t and Kraj{\v c}arov{\'a}, L. and J. Kaiser and Malina, R. and J. Novotn{\'y} and P. Zem{\'a}nek and J Je{\v z}ek and M. {\v S}er{\'y} and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and Dobransk{\'a}, K. and K. Novotn{\'y} and M. Trt{\'\i}lek and O. Samek} } @article { PilatJAP2012, title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification}, journal = {J. Appl. Phycol.}, volume = {24}, year = {2012}, pages = {541-546}, keywords = {MF}, doi = {10.1007/s10811-011-9754-4}, author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and M. {\v S}er{\'y} and O. Samek and P. Zem{\'a}nek and L. Nedbal and M. Trt{\'\i}lek} } @article { JaklJOPAA07, title = {Axial optical trap stiffness influenced by retro-reflected beam}, journal = {J. Opt. A: Pure Appl. Opt.}, volume = {9}, number = {8, Sp. Iss. SI}, year = {2007}, pages = {S251{\textendash}S255}, keywords = {MF}, issn = {1464-4258}, doi = {10.1088/1464-4258/9/8/S19}, author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka and P. Zem{\'a}nek} } @article { JaklJOAM07, title = {Opto-fluidic micromanipulation system based on integrated polymer waveguides}, journal = {J. Optoel Adv. Mater.}, volume = {9}, year = {2007}, pages = {2148-2151}, keywords = {MF}, author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and P. Zem{\'a}nek and Ormos, P. and Valkai, S. and Kelemen, L.} } @article {JezekOE06, title = {Formation of long and thin polymer fiber using nondiffracting beam}, journal = {Opt. Express}, volume = {14}, year = {2006}, pages = {8506-8515}, keywords = {MF}, doi = {10.1364/OE.14.008506}, author = {J Je{\v z}ek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V. Ned{\v e}la and P. Zem{\'a}nek} } @article {JaklJMO03, title = {Behaviour of an optically trapped probe approaching a dielectric interface}, journal = {J Mod. Optics}, volume = {50}, year = {2003}, pages = {1615-1625}, keywords = {MF}, doi = {10.1080/09500340308235235}, author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and A. Jon{\'a}{\v s} and M. Li{\v s}ka and P. Zem{\'a}nek} } @article {ZemanekOPTCOMM03, title = {Theoretical comparison of optical traps created by standing wave and single beam}, journal = {Opt. Commun.}, volume = {220}, year = {2003}, pages = {401-412}, keywords = {MF}, doi = {10.1016/S0030-4018(03)01409-3}, author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka} }