@article {3574, title = {Glycogen, poly(3-hydroxybutyrate) and pigment accumulation in three Synechocystis strains when exposed to a stepwise increasing salt stress}, journal = {JOURNAL OF APPLIED PHYCOLOGY}, volume = {34}, year = {2022}, month = {JUN}, pages = {1227-1241}, keywords = {BF, MF}, issn = {0921-8971}, doi = {10.1007/s10811-022-02693-3}, author = {Meixner, K. and Daffert, C. and Dalnodar, D. and Mrazova, K. and Hrubanov{\'a}, K. and Krzyzanek, V and Nebes{\'a}{\v r}ov{\'a}, J. and Samek, O. and Sedrlova, Z. and Slaninov{\'a}, E. and Sedl{\'a}{\v c}ek, P. and Obru{\v c}a, S. and Fritz, I} } @article {3410, title = {Rapid detection of antibiotic sensitivity of Staphylococcus aureus by Raman tweezers}, journal = {Eur. Phys. J. Plus}, volume = {136}, year = {2021}, pages = {233}, keywords = {BF, KF, MF}, doi = {10.1140/epjp/s13360-021-01152-1}, url = {https://doi.org/10.1140/epjp/s13360-021-01152-1}, author = {Bernatov{\'a}, S. and K. Rebro{\v s}ov{\'a} and Pil{\'a}t, Z. and M. {\v S}er{\'y} and Gjevik, A. and Samek, O. and Je{\v z}ek, J. and {\v S}iler, M. and Kizovsk{\'y}, M. and Klementov{\'a}, T. and Hol{\'a}, V. and F. R{\r u}{\v z}i{\v c}ka and Zem{\'a}nek, P.} } @article {3105, title = {The effects of the treatment conditions on the dissolution profile of ethylcellulose coated pellets}, journal = {Europ. J. of Pharmaceutical Sci.}, volume = {132}, year = {2019}, pages = {86-95}, keywords = {BF, MF}, doi = {10.1016/j.ejps.2019.02.034}, author = {Pavlokov{\'a}, S. and Mu{\v s}el{\'\i}k, J. and Sabadkov{\'a}, D. and Bernatov{\'a}, S. and Samek, O. and Neumann, D. and Franc, A.} } @article { SedlacekAMB19, title = {What keeps polyhydroxyalkanoates in bacterial cells amorphous? A derivation from stress exposure experiments}, journal = {Appl. Microbiol. Biotech.}, volume = {103}, number = {4}, year = {2019}, pages = {1905-1917}, keywords = {BF, MF}, doi = {10.1007/s00253-018-09584-z}, author = {P. Sedl{\'a}{\v c}ek and Slaninov{\'a}, E. and Enev, V. and Koller, M. and J. Nebes{\'a}{\v r}ov{\'a} and I. M{\'a}rov{\'a} and K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and S. Obru{\v c}a} } @article { ProchazkaSAB18, title = {Combination of laser-induced breakdown spectroscopy and Raman spectroscopy for multivariate classification of bacteria}, journal = {Spec. Acta Part B}, volume = {139}, year = {2018}, pages = {6-12}, keywords = {BF, MF}, doi = {10.1016/j.sab.2017.11.004}, author = {D. Proch{\'a}zka and M. Mazura and O. Samek and K. Rebro{\v s}ov{\'a} and P. Po{\v r}{\'\i}zka and J. Klus and P. Proch{\'a}zkov{\'a} and J. Novotn{\'y} and K. Novotn{\'y} and J. Kaiser} } @article { PilatSENS18SERS, title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips}, journal = {Sensors}, volume = {18}, year = {2018}, pages = {3212}, keywords = {BF, MF}, doi = {10.3390/s18103212}, author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek} } @article { PilatSENS18Ecoli, title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress}, journal = {Sensors}, volume = {18}, year = {2018}, pages = {1623}, keywords = {BF, MF}, doi = {10.3390/s18051623}, author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and Kirchhoff, J. and Tannert, A. and Neugebauer, U. and O. Samek and P. Zem{\'a}nek} } @article { HrubanovaSENS18, title = {Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy}, journal = {Sensors}, volume = {18}, number = {12}, year = {2018}, pages = {4089}, keywords = {BF, MF}, doi = {10.3390/s18124089}, author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and F. R{\r u}{\v z}i{\v c}ka and Z. Pil{\'a}t and O. Samek} } @article {RebrosovsaFB17, title = {Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy}, journal = {Future Microbiology}, volume = {12}, year = {2017}, pages = {10}, keywords = {BF, MF}, doi = {10.2217/fmb-2016-0224}, author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and Silva Bernatov{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and V. Hol{\'a}} } @article {HrubanovaMM17, title = {Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy}, journal = {Microscopy and Microanalysis}, volume = {23}, year = {2017}, pages = {S1}, keywords = {BF, MF}, doi = {10.1017/S1431927617006456}, author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and R. Skoup{\'y} and M {\v S}iler and J Je{\v z}ek and S. Obru{\v c}a and P. Zem{\'a}nek} } @article {ObrucaNB17, title = {The presence of PHB granules in cytoplasm protects non-halophilic bacterial cells against the harmful impact of hypertonic environments}, journal = {New Biotechnol.}, volume = {39}, year = {2017}, pages = {10}, keywords = {BF, MF}, doi = {10.1016/j.nbt.2017.07.008}, author = {S. Obru{\v c}a and P. Sedl{\'a}{\v c}ek and F. Mravec and V. Krzy{\v z}{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and O. Samek and D. Ku{\v c}era and Pavla Bene{\v s}ov{\'a} and K. Hrubanov{\'a} and M. Milerov{\'a} and I. M{\'a}rov{\'a}} } @article {RebrosovaSR17, title = {Rapid identification of staphylococci by Raman spectroscopy}, journal = {Sci. Rep.}, volume = {7}, year = {2017}, pages = {14846}, keywords = {BF, MF}, doi = {10.1038/s41598-017-13940-w}, author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and S. Bernatov{\'a} and V. Hol{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and J. Sokolov{\'a} and P. Petr{\'a}{\v s}} } @article { MravecFEMSML16, title = {Accumulation of PHA granules in Cupriavidus necator as seen by confocal fluorescence microscopy}, journal = {FEMS Microbiology Letters}, volume = {363}, year = {2016}, pages = {10}, keywords = {MF}, doi = {10.1093/femsle/fnw094}, author = {F. Mravec and S. Obru{\v c}a and V. Krzy{\v z}{\'a}nek and P. Sedl{\'a}{\v c}ek and K. Hrubanov{\'a} and O. Samek and D. Ku{\v c}era and Pavla Bene{\v s}ov{\'a} and J. Nebes{\'a}{\v r}ov{\'a}} } @article { ObrucaPLOSONE16, title = {Accumulation of Poly(3-hydroxybutyrate) Helps Bacterial Cells to Survive Freezing}, journal = {PLoS ONE}, volume = {11}, year = {2016}, pages = {e0157778}, keywords = {MF}, doi = {10.1371/journal.pone.0157778}, author = {S. Obru{\v c}a and P. Sedl{\'a}{\v c}ek and V. Krzy{\v z}{\'a}nek and F. Mravec and K. Hrubanov{\'a} and O. Samek and D. Ku{\v c}era and Pavla Bene{\v s}ov{\'a} and I. M{\'a}rov{\'a}} } @article { ObrucaAMB16, title = {Evaluation of 3-hydroxybutyrate as an enzyme-protective agent against heating and oxidative damage and its potential role in stress response of poly(3-hydroxybutyrate) accumulating cells}, journal = {Appl Microbiol Biotechnol}, volume = {100}, year = {2016}, pages = {1365-1376}, keywords = {MF}, doi = {10.1007/s00253-015-7162-4}, author = {S. Obru{\v c}a and P. Sedl{\'a}{\v c}ek and F. Mravec and O. Samek and I. M{\'a}rov{\'a}} } @article { HrubanovaMM16, title = {Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy}, journal = {Microscopy and Microanalysis}, volume = {22}, year = {2016}, pages = {S3}, keywords = {MF}, doi = {10.1017/S1431927616006577}, author = {K. Hrubanov{\'a} and O. Samek and A. Haronikov{\'a} and Silva Bernatov{\'a} and P. Zem{\'a}nek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek} } @article {SamekSENS16, title = {Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16}, journal = {Sensors}, volume = {16}, year = {2016}, pages = {1808}, keywords = {MF}, doi = {10.3390/s16111808}, author = {O. Samek and S. Obru{\v c}a and M {\v S}iler and P. Sedl{\'a}{\v c}ek and Pavla Bene{\v s}ov{\'a} and D. Ku{\v c}era and I. M{\'a}rov{\'a} and J Je{\v z}ek and Silva Bernatov{\'a} and P. Zem{\'a}nek} } @article { KrzyzanekMM15, title = {Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria}, journal = {Microscopy and Microanalysis}, volume = {21}, number = {S3}, year = {2015}, pages = {183-184}, keywords = {MF}, doi = {10.1017/S1431927615001713}, author = {V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and O. Samek and S. Obru{\v c}a and I. M{\'a}rov{\'a} and Silva Bernatov{\'a} and M {\v S}iler and P. Zem{\'a}nek} } @article { SamekJBO15, title = {Identification of individual biofilm-forming bacterial cells using Raman tweezers}, journal = {J. Biomed. Opt.}, volume = {20}, number = {5}, year = {2015}, keywords = {MF}, doi = {10.1117/1.JBO.20.5.051038}, author = {O. Samek and Silva Bernatov{\'a} and J Je{\v z}ek and M {\v S}iler and M. {\v S}er{\'y} and V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and P. Zem{\'a}nek and V. Hol{\'a} and F. R{\r u}{\v z}i{\v c}ka} } @article { MlynarikovaSENS15, title = {Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy}, journal = {Sensors}, volume = {15}, year = {2015}, pages = {29635-29647}, keywords = {MF}, doi = {10.3390/s151129635}, author = {K. Mlynarikov{\'a} and O. Samek and Silva Bernatov{\'a} and F. R{\r u}{\v z}i{\v c}ka and J Je{\v z}ek and A. Haronikov{\'a} and M {\v S}iler and P. Zem{\'a}nek and V. Hol{\'a}} } @article { HrubanovaMM15, title = {Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements}, journal = {Microscopy and Microanalysis}, volume = {21}, year = {2015}, pages = {187-188}, keywords = {MF}, doi = {10.1017/S1431927615001737}, author = {K. Hrubanov{\'a} and Silva Bernatov{\'a} and O. Samek and M. {\v S}er{\'y} and P. Zem{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and F. R{\r u}{\v z}i{\v c}ka and V. Krzy{\v z}{\'a}nek} } @article { SamekMM15, title = {SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry}, journal = {Microscopy and Microanalysis}, volume = {21}, year = {2015}, pages = {1775-1776}, keywords = {MF}, doi = {10.1017/S1431927615009654}, author = {O. Samek and A. Haronikov{\'a} and N. Va{\v s}kovicov{\'a} and K. Hrubanov{\'a} and J Je{\v z}ek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek} } @article { BurdikovaDS15, title = {SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry}, journal = {Dairy Sci. Technol.}, volume = {95}, year = {2015}, pages = {687-700}, keywords = {MF}, doi = {10.1007/s13594-015-0253-2}, author = {Z. Burdikov{\'a} and Z. Svindrych and C. Hickey and M. G. Wilkinson and M. A. E. Auty and O. Samek and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and A. Periasamy and J. J. Sheehan} } @article {PorizkaSENS14, title = {Algal Biomass Analysis by Laser-Based Analytical Techniques{\textemdash}A Review}, journal = {Sensors}, volume = {14}, year = {2014}, pages = {17725-17752}, keywords = {MF}, doi = {10.3390/s140917725}, author = {Po{\v r}{\'\i}zka, P. and P. Proch{\'a}zkov{\'a} and D. Proch{\'a}zka and Sl{\'a}dkov{\'a}, L. and Novotn{\'y}, J. and Petrilak, M. and Brada, M. and O. Samek and Pil{\'a}t, Z. and P. Zem{\'a}nek and Adam, V. and Kizek, R. and Novotn{\'y}, J. and Kaiser, J.} } @article { SamekIJMC14, title = {Candida parapsilosis Biofilm Identification by Raman Spectroscopy}, journal = {Int. J. Mol. Sci.}, volume = {15}, year = {2014}, pages = {23924-23935}, keywords = {MF}, doi = {10.3390/ijms151223924}, author = {O. Samek and K. Mlynarikov{\'a} and Silva Bernatov{\'a} and J Je{\v z}ek and V. Krzy{\v z}{\'a}nek and M {\v S}iler and P. Zem{\'a}nek and F. R{\r u}{\v z}i{\v c}ka and V. Hol{\'a} and M. Mahelov{\'a}} } @article { BernatovaMol13, title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy}, journal = {Molecules}, volume = {18}, year = {2013}, pages = {13188-13199}, keywords = {MF}, doi = {10.3390/molecules181113188}, author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka} } @article {PorizkaSAB12, title = {Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology}, journal = {Spectrochim. Acta B}, volume = {74-75}, year = {2012}, pages = {169-176}, keywords = {MF}, doi = {10.1016/j.sab.2012.06.014}, author = {P. Po{\v r}{\'\i}zka and D. Proch{\'a}zka and Z. Pil{\'a}t and Kraj{\v c}arov{\'a}, L. and J. Kaiser and Malina, R. and J. Novotn{\'y} and P. Zem{\'a}nek and J Je{\v z}ek and M. {\v S}er{\'y} and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and Dobransk{\'a}, K. and K. Novotn{\'y} and M. Trt{\'\i}lek and O. Samek} } @article { PilatJAP2012, title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification}, journal = {J. Appl. Phycol.}, volume = {24}, year = {2012}, pages = {541-546}, keywords = {MF}, doi = {10.1007/s10811-011-9754-4}, author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and M. {\v S}er{\'y} and O. Samek and P. Zem{\'a}nek and L. Nedbal and M. Trt{\'\i}lek} } @article { SamekLPL11, title = {Characterization of oil-producing microalgae using Raman spectroscopy}, journal = {Laser Phys. Lett.}, volume = {8}, year = {2011}, pages = {701{\textendash}709}, keywords = {MF}, doi = {10.1002/lapl.201110060}, author = {O. Samek and P. Zem{\'a}nek and A. Jon{\'a}{\v s} and Telle, H. H.} } @article { SamekLPL10, title = {The potential of Raman spectroscopy for the identification of biofilm formation by Staphylococcus epidermidis}, journal = {Laser Phys. Lett.}, volume = {7}, year = {2010}, pages = {378{\textendash}383}, type = {Article}, keywords = {MF}, doi = {10.1002/lapl.200910154}, author = {O. Samek and Al-Marashi, J. F. M. and Telle, H. H.} } @article { Samek2010, title = {Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo}, journal = {Sensors}, volume = {10}, year = {2010}, pages = {8635{\textendash}8651}, keywords = {MF}, doi = {10.3390/s100908635}, author = {O. Samek and A. Jon{\'a}{\v s} and Z. Pil{\'a}t and P. Zem{\'a}nek and L. Nedbal and T{\v r}{\'\i}ska, J. and Kotas, P. and M. Trt{\'\i}lek} }