@article {4130,
	title = {Surface-Enhanced Raman Spectroscopy for Adenine Detection in Five Selected Bacterial Strains Under Stress Conditions},
	journal = {SENSORS},
	volume = {25},
	year = {2025},
	month = {JUL 26},
	pages = {4629},
	keywords = {BF, MF},
	doi = {10.3390/s25154629},
	author = {Ghazalova, Mona and Modlitbova, Pavlina and Samek, Ota and Rebro{\v s}ov{\'a}, Katar{\'\i}na and {\v S}iler, Martin and Je{\v z}ek, Jan and Pil{\'a}t, Zden{\v e}k}
}
@article {3737,
	title = {Aspergillus niger as a cell factory for the production of pyomelanin, a molecule with UV-C radiation shielding activity},
	journal = {Frontiers in Microbiology},
	volume = {14},
	year = {2023},
	keywords = {BF, MF},
	issn = {1664-302X},
	doi = {10.3389/fmicb.2023.1233740},
	url = {https://www.frontiersin.org/articles/10.3389/fmicb.2023.1233740},
	author = {Koch, Stella Marie and Freidank-Pohl, Carsten and Siontas, Oliver and Cortesao, Marta and Mota, Afonso and Runzheimer, Katharina and Jung, Sascha and Rebro{\v s}ov{\'a}, Katar{\'\i}na and {\v S}iler, Martin and Moeller, Ralf and Meyer, Vera}
}
@article {3773,
	title = {Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis},
	journal = {Frontiers in Microbiology},
	volume = {14},
	year = {2023},
	keywords = {BF, MF},
	doi = {10.3389/fmicb.2023.1272734},
	url = {https://www.frontiersin.org/articles/10.3389/fmicb.2023.1272734},
	author = {Siems, Katharina and Runzheimer, Katharina and Rebro{\v s}ov{\'a}, Katar{\'\i}na and Etzbach, Lara and Auerhammer, Alina and Rehm, Anna and Schwengers, Oliver and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Moeller, Ralf}
}
@article {3728,
	title = {SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering},
	journal = {Biosensors},
	volume = {13},
	year = {2023},
	pages = {182},
	keywords = {BF, MF},
	issn = {2079-6374},
	doi = {10.3390/bios13020182},
	url = {https://www.mdpi.com/2079-6374/13/2/182},
	author = {Bene{\v s}ov{\'a}, Mark{\'e}ta and Bernatov{\'a}, Silvie and Mika, Filip and Pokorn{\'a}, Zuzana and Je{\v z}ek, Jan and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Rebro{\v s}ov{\'a}, Katar{\'\i}na and Zem{\'a}nek, Pavel and Pil{\'a}t, Zden{\v e}k}
}
@article {3503,
	title = {Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References},
	journal = {Photonics},
	volume = {9},
	year = {2022},
	pages = {37},
	keywords = {BF, KF, MF},
	doi = {10.3390/photonics9010037},
	url = {https://www.mdpi.com/2304-6732/9/1/37},
	author = {J{\'a}kl, Petr and {\v S}iler, Martin and Je{\v z}ek, Jan and Cifuentes, Angel and Tr{\"a}g{\r a}rdh, Johanna and Zem{\'a}nek, Pavel and Cizmar, Tomas}
}
@article {3417,
	title = {Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris},
	journal = {Biosensors},
	volume = {11},
	year = {2021},
	pages = {115},
	keywords = {BF, MF},
	issn = {2079-6374},
	doi = {10.3390/bios11040115},
	url = {https://www.mdpi.com/2079-6374/11/4/115},
	author = {Kizovsk{\'y}, Martin and Pil{\'a}t, Zden{\v e}k and Mylenko, Mykola and Hrouzek, Pavel and Kuta, Jan and Skoup{\'y}, Radim and Krzy{\v z}{\'a}nek, Vladislav and Hrubanov{\'a}, Kamila and Adamczyk, Olga and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Klementov{\'a}, Tereza and Gjevik, Al{\v z}b{\v e}ta and {\v S}iler, Martin and Samek, Ota and Zem{\'a}nek, Pavel}
}
@article {3189,
	title = {Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy},
	journal = {Future Microbiology},
	volume = {14},
	year = {2019},
	pages = {509-517},
	abstract = {<p>Aim: Finding rapid, reliable diagnostic methods is a big challenge in clinical microbiology. Raman spectroscopy is an optical method used for multiple applications in scientific fields including microbiology. This work reports its potential in identifying biofilm positive strains of Candida parapsilosis and Staphylococcus epidermidis. Materials \&amp; methods: We tested 54 S. epidermidis strains (23 biofilm positive, 31 negative) and 51 C. parapsilosis strains (27 biofilm positive, 24 negative) from colonies on Mueller-Hinton agar plates, using Raman spectroscopy. Results: The accuracy was 98.9\% for C. parapsilosis and 96.1\% for S. epidermidis. Conclusion: The method showed great potential for identifying biofilm positive bacterial and yeast strains. We suggest that Raman spectroscopy might become a useful aid in clinical diagnostics.</p>},
	keywords = {BF, KF, MF},
	doi = {10.2217/fmb-2018-0297},
	url = {https://doi.org/10.2217/fmb-2018-0297},
	author = {Rebro{\v s}ov{\'a}, Katar{\'\i}na and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Bernatov{\'a}, Silvie and Je{\v z}ek, Jan and Zem{\'a}nek, Pavel and Hol{\'a}, Veronika}
}
@article { PilatSENS18SERS,
	title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {3212},
	keywords = {BF, MF},
	doi = {10.3390/s18103212},
	author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek}
}
@article {RebrosovsaFB17,
	title = {Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy},
	journal = {Future Microbiology},
	volume = {12},
	year = {2017},
	pages = {10},
	keywords = {BF, MF},
	doi = {10.2217/fmb-2016-0224},
	author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and Silva Bernatov{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and V. Hol{\'a}}
}
@article {HrubanovaMM17,
	title = {Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy},
	journal = {Microscopy and Microanalysis},
	volume = {23},
	year = {2017},
	pages = {S1},
	keywords = {BF, MF},
	doi = {10.1017/S1431927617006456},
	author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and R. Skoup{\'y} and M {\v S}iler and J Je{\v z}ek and S. Obru{\v c}a and P. Zem{\'a}nek}
}
@article {RebrosovaSR17,
	title = {Rapid identification of staphylococci by Raman spectroscopy},
	journal = {Sci. Rep.},
	volume = {7},
	year = {2017},
	pages = {14846},
	keywords = {BF, MF},
	doi = {10.1038/s41598-017-13940-w},
	author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and S. Bernatov{\'a} and V. Hol{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and J. Sokolov{\'a} and P. Petr{\'a}{\v s}}
}
