@article {3606,
	title = {All-optical sub-Kelvin sympathetic cooling of a levitated microsphere in vacuum},
	journal = {Optica},
	volume = {9},
	year = {2022},
	month = {Sep},
	pages = {1000{\textendash}1002},
	abstract = {<p>We demonstrate all-optical sympathetic cooling of a laser-trapped microsphere to sub-Kelvin temperatures, mediated by optical binding to a feedback-cooled adjacent particle. Our study opens prospects for multi-particle quantum entanglement and sensing in levitated optomechanics.</p>},
	keywords = {LF, MF},
	doi = {10.1364/OPTICA.466337},
	url = {https://opg.optica.org/optica/abstract.cfm?URI=optica-9-9-1000},
	author = {Y. Arita and G. D. Bruce and E. M. Wright and S. H. Simpson and P. Zem{\'a}nek and K. Dholakia}
}
@article {3337,
	title = {Analysis of bacteriophage-host interaction by Raman tweezers},
	journal = {Analytical Chemistry},
	volume = {92},
	year = {2020},
	pages = {12304{\textendash}12311},
	keywords = {BF, KF, MF},
	author = {Pil{\'a}t, Z and Jon{\'a}{\v s}, A and Pil{\'a}tov{\'a}, J and Klementov{\'a}, T and Bernatov{\'a}, S and {\v S}iler, M and Ma{\v n}ka, T and Kizovsk{\'y}, M and R{\r u}{\v z}i{\v c}ka, F and Pan{\r u}{\v c}ek, R and Neugebauer, U and Samek, O and Zem{\'a}nek, P}
}
@article {3367,
	title = {Coherent oscillations of a levitated birefringent microsphere in vacuum driven by nonconservative rotation-translation coupling},
	journal = {Science Advances},
	volume = {6},
	year = {2020},
	keywords = {LF, MF},
	author = {Arita, Y and Simpson, SH and Zem{\'a}nek, P and Dholakia, K}
}
@article {3326,
	title = {Nanovortex-driven all-dielectric optical diffusion boosting and sorting concept for lab-on-a-chip platforms},
	journal = {Advanced Science},
	volume = {7},
	year = {2020},
	keywords = {LF, MF},
	doi = {10.1002/advs.201903049},
	author = {Valero, AC and Kislov, D and Gurvitz, EA and Shamkhi, HK and Pavlov, AA and Redka, D and Yankin, S and Zem{\'a}nek, P and Shalin, AS}
}
@article {DonatoNL19,
	title = {Optical Trapping, Optical Binding, and Rotational Dynamics of Silicon	Nanowires in Counter-Propagating Beams},
	journal = {Nano Lett.},
	volume = {19},
	year = {2019},
	pages = {342-352},
	keywords = {LF, MF},
	doi = {10.1021/acs.nanolett.8b03978},
	author = {Donato, Maria G. and Oto Brzobohat{\'y} and S. H. Simpson and Irrera, Alessia and Leonardi, Antonio A. and Lo Faro, Maria J. and Vojtech Svak and Marag{\`o}, Onofrio M. and P. Zem{\'a}nek}
}
@article { BrzobohatyOL19,
	title = {Optomechanical properties of optically self-arranged colloidal waveguides},
	journal = {Opt. Lett.},
	volume = {44},
	year = {2019},
	pages = {707-710},
	keywords = {LF, MF},
	doi = {10.1364/OL.44.000707},
	author = {Oto Brzobohat{\'y} and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek}
}
@article { ArzolaSR19,
	title = {Spin to orbital light momentum conversion visualized by particle trajectory},
	journal = {Sci. Rep.},
	volume = {9},
	year = {2019},
	pages = {4127:1-7},
	keywords = {LF, MF},
	doi = {10.1038/s41598-019-40475-z},
	author = {Alejandro V. Arzola and Luk{\'a}{\v s} Chv{\'a}tal and P J{\'a}kl and P. Zem{\'a}nek}
}
@article { BrzobohatyACSPHOT19,
	title = {Tunable Soft-Matter Optofluidic Waveguides Assembled by Light},
	journal = {ACS Phot.},
	volume = {6},
	year = {2019},
	pages = {403-410},
	keywords = {LF, MF},
	doi = {10.1021/acsphotonics.8b01331},
	author = {Oto Brzobohat{\'y} and Luk{\'a}{\v s} Chv{\'a}tal and A. Jon{\'a}{\v s} and M {\v S}iler and J. Ka{\v n}ka and J Je{\v z}ek and P. Zem{\'a}nek}
}
@article { PilatSENS18SERS,
	title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {3212},
	keywords = {BF, MF},
	doi = {10.3390/s18103212},
	author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek}
}
@article {SilerPRL18,
	title = {Diffusing up the Hill: Dynamics and Equipartition in Highly Unstable Systems},
	journal = {Phys. Rev. Lett.},
	volume = {121},
	year = {2018},
	pages = {23601},
	keywords = {LF, MF},
	doi = {10.1103/PhysRevLett.121.230601},
	author = {M {\v S}iler and Ornigotti, L. and Oto Brzobohat{\'y} and P J{\'a}kl and Artem Ryabov and Holubec, V. and P. Zem{\'a}nek and Radim Filip}
}
@article { DamkovaLSA18,
	title = {Enhancement of the {\textquoteleft}tractor-beam{\textquoteright} pulling force on an optically bound structure},
	journal = {Light: Sci. Appl.},
	volume = {7},
	year = {2018},
	pages = {17135},
	keywords = {LF, MF},
	doi = {10.1038/lsa.2017.135},
	author = {Damkov{\'a}, Jana and Luk{\'a}{\v s} Chv{\'a}tal and J Je{\v z}ek and Oulehla, Jindrich and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article { PilatSENS18Ecoli,
	title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {1623},
	keywords = {BF, MF},
	doi = {10.3390/s18051623},
	author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and Kirchhoff, J. and Tannert, A. and Neugebauer, U. and O. Samek and P. Zem{\'a}nek}
}
@article {SvakNC18,
	title = {Transverse spin forces and non-equilibrium particle dynamics in a circularly polarized vacuum optical trap},
	journal = {Nature Commun.},
	volume = {9},
	year = {2018},
	pages = {5453},
	keywords = {LF, MF},
	doi = {10.1038/s41467-018-07866-8},
	author = {Vojtech Svak and Oto Brzobohat{\'y} and M {\v S}iler and P J{\'a}kl and J. Ka{\v n}ka and P. Zem{\'a}nek and S. H. Simpson}
}
@article { GargiuloACSNano17,
	title = {Accuracy and Mechanistic Details of Optical Printing of Single Au and Ag Nanoparticles},
	journal = {ACS nano},
	volume = {11},
	number = {10},
	year = {2017},
	pages = {9678{\textendash}9688},
	keywords = {LF, MF},
	doi = {10.1021/acsnano.7b04136},
	author = {Gargiulo, Juli{\`a}n and Violi, Ianina L and Cerrota, Santiago and Luk{\'a}{\v s} Chv{\'a}tal and Cort{\`e}s, Emiliano and Perassi, Eduardo M and Diaz, Fernando and P. Zem{\'a}nek and Stefani, Fernando D}
}
@article {RebrosovsaFB17,
	title = {Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy},
	journal = {Future Microbiology},
	volume = {12},
	year = {2017},
	pages = {10},
	keywords = {BF, MF},
	doi = {10.2217/fmb-2016-0224},
	author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and Silva Bernatov{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and V. Hol{\'a}}
}
@article { KarasekOL17,
	title = {Dynamics of an optically bound structure made of particles of unequal sizes},
	journal = {Opt. Lett.},
	volume = {42},
	number = {7},
	year = {2017},
	pages = {1436-1439},
	keywords = {LF, MF},
	issn = {0146-9592},
	doi = {10.1364/OL.42.001436},
	author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article {PilatSENS17,
	title = {Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System},
	journal = {Sensors},
	volume = {17},
	year = {2017},
	pages = {2640},
	keywords = {BF, MF},
	doi = {10.3390/s17112640},
	author = {Z. Pil{\'a}t and A. Jon{\'a}{\v s} and J Je{\v z}ek and P. Zem{\'a}nek}
}
@article {HrubanovaMM17,
	title = {Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy},
	journal = {Microscopy and Microanalysis},
	volume = {23},
	year = {2017},
	pages = {S1},
	keywords = {BF, MF},
	doi = {10.1017/S1431927617006456},
	author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and R. Skoup{\'y} and M {\v S}iler and J Je{\v z}ek and S. Obru{\v c}a and P. Zem{\'a}nek}
}
@article { ArzolaPRL17,
	title = {Omnidirectional Transport in Fully Reconfigurable Two Dimensional Optical Ratchets},
	journal = {Phys. Rev. Lett.},
	volume = {118},
	year = {2017},
	pages = {138002},
	keywords = {LF, MF},
	doi = {10.1103/PhysRevLett.118.138002},
	author = {Alejandro V. Arzola and Villasante-Barahona, Mario and Karen Volke-Sep{\'u}lveda and P J{\'a}kl and P. Zem{\'a}nek}
}
@article { SimpsonNL17,
	title = {Optical Binding of Nanowires},
	journal = {Nano Lett.},
	volume = {17},
	number = {6},
	year = {2017},
	pages = {3485-3492},
	keywords = {LF, MF},
	doi = {10.1021/acs.nanolett.7b00494},
	author = {S. H. Simpson and P. Zem{\'a}nek and Marag{\`o}, Onofrio M. and Jones, Philip H. and Hanna, Simon}
}
@article {RebrosovaSR17,
	title = {Rapid identification of staphylococci by Raman spectroscopy},
	journal = {Sci. Rep.},
	volume = {7},
	year = {2017},
	pages = {14846},
	keywords = {BF, MF},
	doi = {10.1038/s41598-017-13940-w},
	author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and S. Bernatov{\'a} and V. Hol{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and J. Sokolov{\'a} and P. Petr{\'a}{\v s}}
}
@article { JonasJOSAB17,
	title = {Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators},
	journal = {J. Opt. Soc. Am. B},
	volume = {34},
	year = {2017},
	pages = {1855-1864},
	keywords = {BF, MF},
	doi = {10.1364/JOSAB.34.001855},
	author = {A. Jon{\'a}{\v s} and Z. Pil{\'a}t and J Je{\v z}ek and Silva Bernatov{\'a} and T. Fo{\v r}t and P. Zem{\'a}nek and Mehdi Aas and Alper Kiraz}
}
@article { SilerSR17,
	title = {Thermally induced micro-motion by inflection in optical potential},
	journal = {Sci. Rep.},
	volume = {7},
	year = {2017},
	pages = {1697},
	keywords = {LF, MF},
	issn = {2045-2322},
	doi = {10.1038/s41598-017-01848-4},
	author = {M {\v S}iler and P J{\'a}kl and Oto Brzobohat{\'y} and Artem Ryabov and Radim Filip and P. Zem{\'a}nek}
}
@article { BrzobohatyOE16,
	title = {Chiral particles in the dual-beam optical trap},
	journal = {Opt. Express},
	volume = {24},
	year = {2016},
	pages = {26382-26391},
	keywords = {MF},
	doi = {10.1364/OE.24.026382},
	author = {Oto Brzobohat{\'y} and Hernandez, Raul Josue and S. H. Simpson and Mazzulla, Alfredo and Cipparrone, Gabriella and P. Zem{\'a}nek}
}
@article { SilerOL16,
	title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle},
	journal = {Opt. Lett.},
	volume = {41},
	year = {2016},
	pages = {870-873},
	keywords = {MF},
	doi = {10.1364/OL.41.000870},
	author = {M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article { TomoriJOpt16,
	title = {Holographic Raman tweezers controlled by Multimodal Natural User Interface},
	journal = {J. Opt.},
	volume = {18},
	year = {2016},
	pages = {015602:1-9},
	keywords = {MF},
	doi = {10.1088/2040-8978/18/1/015602},
	author = {Z. Tomori and P. Ke{\v s}a and M. Nikorovi{\v c} and J. Ka{\v n}ka and P J{\'a}kl and M. {\v S}er{\'y} and Silva Bernatov{\'a} and E. Valu{\v s}ov{\'a} and M. Antal{\'\i}k and P. Zem{\'a}nek}
}
@article { HrubanovaMM16,
	title = {Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy},
	journal = {Microscopy and Microanalysis},
	volume = {22},
	year = {2016},
	pages = {S3},
	keywords = {MF},
	doi = {10.1017/S1431927616006577},
	author = {K. Hrubanov{\'a} and O. Samek and A. Haronikov{\'a} and Silva Bernatov{\'a} and P. Zem{\'a}nek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek}
}
@article { ZemanekJOpt16,
	title = {Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry},
	journal = {Journal of Optics},
	volume = {18},
	number = {6},
	year = {2016},
	pages = {065402},
	keywords = {MF},
	doi = {10.1088/2040-8978/18/6/065401},
	author = {P. Zem{\'a}nek and M {\v S}iler and Oto Brzobohat{\'y} and P J{\'a}kl and Radim Filip}
}
@article { FilipJOpt16,
	title = {Noise-to-signal transition of a Brownian particle in the cubic potential: I. general theory},
	journal = {Journal of Optics},
	volume = {18},
	number = {6},
	year = {2016},
	pages = {065401},
	keywords = {MF},
	doi = {10.1088/2040-8978/18/6/065401},
	author = {Radim Filip and P. Zem{\'a}nek}
}
@article {SamekSENS16,
	title = {Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16},
	journal = {Sensors},
	volume = {16},
	year = {2016},
	pages = {1808},
	keywords = {MF},
	doi = {10.3390/s16111808},
	author = {O. Samek and S. Obru{\v c}a and M {\v S}iler and P. Sedl{\'a}{\v c}ek and Pavla Bene{\v s}ov{\'a} and D. Ku{\v c}era and I. M{\'a}rov{\'a} and J Je{\v z}ek and Silva Bernatov{\'a} and P. Zem{\'a}nek}
}
@article { SimpsonPRA16,
	title = {Synchronization of colloidal rotors through angular optical binding},
	journal = {Phys. Rev. A},
	volume = {93},
	year = {2016},
	pages = {023842},
	keywords = {MF},
	doi = {10.1103/PhysRevA.93.023842},
	author = {S. H. Simpson and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek}
}
@article { RyabovPRE16,
	title = {Thermally-induced passage and current of particles in highly unstable optical potential},
	journal = {Phys. Rev.E},
	volume = {16},
	year = {2016},
	pages = {042108},
	keywords = {MF},
	doi = {10.1103/PhysRevE.94.042108},
	author = {Artem Ryabov and P. Zem{\'a}nek and Radim Filip}
}
@article { ChvatalOR15,
	title = {Binding of a pair of Au nanoparticles in a wide Gaussian	standing wave},
	journal = {Opt. Rev.},
	volume = {22},
	year = {2015},
	pages = {157-161},
	keywords = {MF},
	doi = {10.1007/s10043-015-0027-3},
	author = {Luk{\'a}{\v s} Chv{\'a}tal and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article { BrzobohatyOE15b,
	title = {Complex rotational dynamics of multiple spheroidal	particles in a circularly polarized, dual beam trap},
	journal = {Opt. Express},
	volume = {23},
	year = {2015},
	pages = {7273-7287},
	keywords = {MF},
	doi = {10.1364/OE.23.007273},
	author = {Oto Brzobohat{\'y} and Alejandro V. Arzola and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and P J{\'a}kl and S. H. Simpson and P. Zem{\'a}nek}
}
@article { KrzyzanekMM15,
	title = {Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria},
	journal = {Microscopy and Microanalysis},
	volume = {21},
	number = {S3},
	year = {2015},
	pages = {183-184},
	keywords = {MF},
	doi = {10.1017/S1431927615001713},
	author = {V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and O. Samek and S. Obru{\v c}a and I. M{\'a}rov{\'a} and Silva Bernatov{\'a} and M {\v S}iler and P. Zem{\'a}nek}
}
@article { SamekJBO15,
	title = {Identification of individual biofilm-forming bacterial cells using Raman tweezers},
	journal = {J. Biomed. Opt.},
	volume = {20},
	number = {5},
	year = {2015},
	keywords = {MF},
	doi = {10.1117/1.JBO.20.5.051038},
	author = {O. Samek and Silva Bernatov{\'a} and J Je{\v z}ek and M {\v S}iler and M. {\v S}er{\'y} and V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and P. Zem{\'a}nek and V. Hol{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { MlynarikovaSENS15,
	title = {Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy},
	journal = {Sensors},
	volume = {15},
	year = {2015},
	pages = {29635-29647},
	keywords = {MF},
	doi = {10.3390/s151129635},
	author = {K. Mlynarikov{\'a} and O. Samek and Silva Bernatov{\'a} and F. R{\r u}{\v z}i{\v c}ka and J Je{\v z}ek and A. Haronikov{\'a} and M {\v S}iler and P. Zem{\'a}nek and V. Hol{\'a}}
}
@article { HrubanovaMM15,
	title = {Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements},
	journal = {Microscopy and Microanalysis},
	volume = {21},
	year = {2015},
	pages = {187-188},
	keywords = {MF},
	doi = {10.1017/S1431927615001737},
	author = {K. Hrubanov{\'a} and Silva Bernatov{\'a} and O. Samek and M. {\v S}er{\'y} and P. Zem{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and F. R{\r u}{\v z}i{\v c}ka and V. Krzy{\v z}{\'a}nek}
}
@article { BrzobohatyOE15,
	title = {Non-spherical gold nanoparticles trapped in optical tweezers: shape matters},
	journal = {Opt. Express},
	volume = {23},
	year = {2015},
	pages = {8179-8189},
	keywords = {MF},
	doi = {10.1364/OE.23.008179},
	author = {Oto Brzobohat{\'y} and M {\v S}iler and J. Trojek and Luk{\'a}{\v s} Chv{\'a}tal and V{\'\i}t{\v e}zslav Kar{\'a}sek and P. Zem{\'a}nek}
}
@article { SilerJQSRT15,
	title = {Optical trapping in secondary maxima of focused laser beam},
	journal = {J. Quant. Spectrosc. Radiat. Transf.},
	volume = {162},
	year = {2015},
	pages = {114 - 121},
	keywords = {MF},
	doi = {10.1016/j.jqsrt.2015.03.003},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { SamekMM15,
	title = {SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry},
	journal = {Microscopy and Microanalysis},
	volume = {21},
	year = {2015},
	pages = {1775-1776},
	keywords = {MF},
	doi = {10.1017/S1431927615009654},
	author = {O. Samek and A. Haronikov{\'a} and N. Va{\v s}kovicov{\'a} and K. Hrubanov{\'a} and J Je{\v z}ek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek}
}
@article { BrzobohatySR15,
	title = {Three-Dimensional Optical Trapping of a Plasmonic Nanoparticle using Low Numerical Aperture Optical Tweezers},
	journal = {Sci. Rep.},
	volume = {5},
	year = {2015},
	pages = {8106},
	keywords = {MF},
	doi = {10.1038/srep08106},
	author = {Oto Brzobohat{\'y} and M {\v S}iler and J. Trojek and Luk{\'a}{\v s} Chv{\'a}tal and V{\'\i}t{\v e}zslav Kar{\'a}sek and Ale{\v s} Pat{\'a}k and Zuzana Pokorn{\'a} and Filip Mika and P. Zem{\'a}nek}
}
@article {PorizkaSENS14,
	title = {Algal Biomass Analysis by Laser-Based Analytical Techniques{\textemdash}A Review},
	journal = {Sensors},
	volume = {14},
	year = {2014},
	pages = {17725-17752},
	keywords = {MF},
	doi = {10.3390/s140917725},
	author = {Po{\v r}{\'\i}zka, P. and P. Proch{\'a}zkov{\'a} and D. Proch{\'a}zka and Sl{\'a}dkov{\'a}, L. and Novotn{\'y}, J. and Petrilak, M. and Brada, M. and O. Samek and Pil{\'a}t, Z. and P. Zem{\'a}nek and Adam, V. and Kizek, R. and Novotn{\'y}, J. and Kaiser, J.}
}
@article { SamekIJMC14,
	title = {Candida parapsilosis Biofilm Identification by Raman	Spectroscopy},
	journal = {Int. J. Mol. Sci.},
	volume = {15},
	year = {2014},
	pages = {23924-23935},
	keywords = {MF},
	doi = {10.3390/ijms151223924},
	author = {O. Samek and K. Mlynarikov{\'a} and Silva Bernatov{\'a} and J Je{\v z}ek and V. Krzy{\v z}{\'a}nek and M {\v S}iler and P. Zem{\'a}nek and F. R{\r u}{\v z}i{\v c}ka and V. Hol{\'a} and M. Mahelov{\'a}}
}
@article { JaklOE14,
	title = {Optical sorting of nonspherical and living microobjects in moving interference structures},
	journal = {Opt. Express},
	volume = {22},
	year = {2014},
	pages = {29746-29760},
	keywords = {MF},
	doi = {10.1364/OE.22.029746},
	author = {P J{\'a}kl and Alejandro V. Arzola and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and Karen Volke-Sep{\'u}lveda and P. Zem{\'a}nek}
}
@article { ArzolaOE14,
	title = {Rotation, oscillation and hydrodynamic synchronization of optically trapped oblate spheroidal microparticles},
	journal = {Opt. Express},
	volume = {22},
	year = {2014},
	pages = {16207-16221},
	keywords = {MF},
	doi = {10.1364/OE.22.016207},
	author = {Alejandro V. Arzola and P J{\'a}kl and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek}
}
@article { BrzobohatyNP13,
	title = {Experimental demonstration of optical transport, sorting and self-arrangement using a {\textquoteleft}tractor beam{\textquoteright}},
	journal = {Nature Photon.},
	volume = {7},
	number = {2},
	year = {2013},
	pages = {123-127},
	keywords = {MF},
	doi = {10.1038/nphoton.2012.332},
	author = {Oto Brzobohat{\'y} and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek}
}
@article { BernatovaMol13,
	title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy},
	journal = {Molecules},
	volume = {18},
	year = {2013},
	pages = {13188-13199},
	keywords = {MF},
	doi = {10.3390/molecules181113188},
	author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { TomoriOPJ13,
	title = {Holographic Raman tweezers controlled by hand gestures and voice commands},
	journal = {Optics and Photonics Journal},
	volume = {3},
	year = {2013},
	pages = {331-336},
	keywords = {MF},
	doi = {10.4236/opj.2013.32B076},
	author = {Z. Tomori and M. Antal{\'\i}k and P. Ke{\v s}a and J. Ka{\v n}ka and P J{\'a}kl and M. {\v S}er{\'y} and Silva Bernatov{\'a} and P. Zem{\'a}nek}
}
@article { SilerJQSRT13,
	title = {Metallic nanoparticles in a standing wave: optical force	and heating},
	journal = {J. Quant. Spectrosc. Radiat. Transf.},
	volume = {126},
	year = {2013},
	pages = {84-90},
	keywords = {MF},
	doi = {10.1016/j.jqsrt.2012.10.005},
	author = {M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek}
}
@article { SilerJQSRT13b,
	title = {Optical forces in a non-diffracting vortex beam},
	journal = {J. Quant. Spectrosc. Radiat. Transf.},
	volume = {126},
	year = {2013},
	pages = {78-83},
	keywords = {MF},
	doi = {10.1016/j.jqsrt.2012.08.030},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { BrzobohatyOL13,
	title = {Optical manipulation of aerosol droplets using a	holographic dual and single beam trap},
	journal = {Opt. Lett.},
	volume = {38},
	number = {22},
	year = {2013},
	pages = {4601-4604},
	keywords = {MF},
	doi = {10.1364/OL.38.004601},
	author = {Oto Brzobohat{\'y} and M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and P. Zem{\'a}nek}
}
@article { PilatJPPB13,
	title = {Optical trapping of microalgae at 735{\textendash}1064 nm: Photodamage assessment},
	journal = {J. Photochem. Photobiol. B},
	volume = {121},
	year = {2013},
	pages = {27 - 31},
	keywords = {MF},
	doi = {10.1016/j.jphotobiol.2013.02.006},
	author = {Z. Pil{\'a}t and J Je{\v z}ek and M. {\v S}er{\'y} and M. Trt{\'\i}lek and L. Nedbal and P. Zem{\'a}nek}
}
@article {AasOE13,
	title = {Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching},
	journal = {Opt. Express},
	volume = {21},
	number = {18},
	year = {2013},
	pages = {21380-21394},
	keywords = {MF},
	doi = {10.1364/OE.21.021380},
	author = {Mehdi Aas and A. Jon{\'a}{\v s} and Alper Kiraz and Oto Brzobohat{\'y} and J Je{\v z}ek and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article {PorizkaSAB12,
	title = {Application of laser-induced breakdown spectroscopy to the analysis of	algal biomass for industrial biotechnology},
	journal = {Spectrochim. Acta B},
	volume = {74-75},
	year = {2012},
	pages = {169-176},
	keywords = {MF},
	doi = {10.1016/j.sab.2012.06.014},
	author = {P. Po{\v r}{\'\i}zka and D. Proch{\'a}zka and Z. Pil{\'a}t and Kraj{\v c}arov{\'a}, L. and J. Kaiser and Malina, R. and J. Novotn{\'y} and P. Zem{\'a}nek and J Je{\v z}ek and M. {\v S}er{\'y} and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and Dobransk{\'a}, K. and K. Novotn{\'y} and M. Trt{\'\i}lek and O. Samek}
}
@article { TrojekJOSAA12,
	title = {Optical alignment and confinement of an ellipsoidal	nanorod in optical tweezers: a theoretical study},
	journal = {J. Opt. Soc. Am. A},
	volume = {29},
	number = {7},
	year = {2012},
	pages = {1224{\textendash}1236},
	keywords = {MF},
	doi = {10.1364/JOSAA.29.001224},
	author = {J. Trojek and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek}
}
@article { SilerOE12,
	title = {Optical forces induced behavior of a particle in a non-diffracting vortex beam},
	journal = {Opt. Express},
	volume = {20},
	year = {2012},
	pages = {24304-24319},
	keywords = {MF},
	doi = {10.1364/OE.20.024304},
	author = {M {\v S}iler and P J{\'a}kl and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article { PilatJAP2012,
	title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification},
	journal = {J. Appl. Phycol.},
	volume = {24},
	year = {2012},
	pages = {541-546},
	keywords = {MF},
	doi = {10.1007/s10811-011-9754-4},
	author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and M. {\v S}er{\'y} and O. Samek and P. Zem{\'a}nek and L. Nedbal and M. Trt{\'\i}lek}
}
@article { SilerAPL12,
	title = {Speed enhancement of multi-particle chain in a traveling	standing wave},
	journal = {Appl. Phys. Lett.},
	volume = {100},
	year = {2012},
	pages = {051103},
	keywords = {MF},
	doi = {10.1063/1.3680234},
	author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek}
}
@article { SamekLPL11,
	title = {Characterization of oil-producing microalgae using Raman spectroscopy},
	journal = {Laser Phys. Lett.},
	volume = {8},
	year = {2011},
	pages = {701{\textendash}709},
	keywords = {MF},
	doi = {10.1002/lapl.201110060},
	author = {O. Samek and P. Zem{\'a}nek and A. Jon{\'a}{\v s} and Telle, H. H.}
}
@article { BrzobohatyAPL11,
	title = {Dynamic size tuning of multidimensional optically bound	matter},
	journal = {Appl. Phys. Lett.},
	volume = {99},
	year = {2011},
	pages = {101105},
	keywords = {MF},
	doi = {10.1063/1.3634007},
	author = {Oto Brzobohat{\'y} and V{\'\i}t{\v e}zslav Kar{\'a}sek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek}
}
@article { CizmarLPL11,
	title = {The holographic optical micro-manipulation system based	on counter-propagating beams},
	journal = {Laser Phys. Lett.},
	volume = {8},
	year = {2011},
	pages = {50{\textendash}56},
	keywords = {MF},
	doi = {10.1002/lapl.201010100},
	author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and Oto Brzobohat{\'y} and Kishan Dholakia and P. Zem{\'a}nek}
}
@article { SilerJOPT11,
	title = {Parametric study of optical forces acting upon nanoparticles in a single, or a standing, evanescent	wave},
	journal = {J. Opt.},
	volume = {13},
	year = {2011},
	pages = {044016:1{\textendash}9},
	keywords = {MF},
	doi = {10.1088/2040-8978/13/4/044016},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { BrzobohatyOE11,
	title = {Static and dynamic behavior of two optically bound	microparticles in a standing wave},
	journal = {Opt. Express},
	volume = {19},
	year = {2011},
	pages = {19613{\textendash}19626},
	keywords = {MF},
	doi = {10.1364/OE.19.019613},
	author = {Oto Brzobohat{\'y} and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and J. Trojek and P. Zem{\'a}nek}
}
@article { BrzobohatyOE10,
	title = {Experimental and theoretical determination of optical	binding forces},
	journal = {Opt. Express},
	volume = {18},
	number = {24},
	year = {2010},
	pages = {25389{\textendash}25402},
	keywords = {MF},
	issn = {1094-4087},
	doi = {10.1364/OE.18.025389},
	author = {Oto Brzobohat{\'y} and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Kishan Dholakia and P. Zem{\'a}nek}
}
@article { DholakiaRMP10,
	title = {Gripped by light: Optical binding},
	journal = {Rev. Mod. Phys.},
	volume = {82},
	year = {2010},
	pages = {1767{\textendash}1791},
	keywords = {MF},
	doi = {10.1103/RevModPhys.82.1767},
	author = {Kishan Dholakia and P. Zem{\'a}nek}
}
@article { SilerNJP10,
	title = {Particle jumps between optical traps in a one-dimensional	optical lattice},
	journal = {New. J. Phys.},
	volume = {12},
	year = {2010},
	pages = {083001:1{\textendash}20},
	keywords = {MF},
	doi = {10.1088/1367-2630/12/8/083001},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { Samek2010,
	title = {Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo},
	journal = {Sensors},
	volume = {10},
	year = {2010},
	pages = {8635{\textendash}8651},
	keywords = {MF},
	doi = {10.3390/s100908635},
	author = {O. Samek and A. Jon{\'a}{\v s} and Z. Pil{\'a}t and P. Zem{\'a}nek and L. Nedbal and T{\v r}{\'\i}ska, J. and Kotas, P. and M. Trt{\'\i}lek}
}
@article { TrojekOE09,
	title = {Extreme axial optical force in a standing wave achieved by optimized object shape},
	journal = {Opt. Express},
	volume = {17},
	number = {13},
	year = {2009},
	pages = {10472{\textendash}10488},
	publisher = {OSA},
	keywords = {MF},
	doi = {10.1364/OE.17.010472},
	author = {J. Trojek and V{\'\i}t{\v e}zslav Kar{\'a}sek and P. Zem{\'a}nek}
}
@article { KarasekJOPA09,
	title = {Longitudinal optical binding of several spherical	particles studied by the coupled dipole method},
	journal = {J. Opt. A: Pure Appl. Opt.},
	volume = {11},
	year = {2009},
	pages = {034009},
	keywords = {MF},
	doi = {10.1088/1464-4258/11/3/034009},
	author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article { BrzobohatyOE08,
	title = {High quality quasi-Bessel beam generated by round-tip	axicon},
	journal = {Opt. Express},
	volume = {16},
	year = {2008},
	pages = {12688{\textendash}12700},
	keywords = {MF},
	doi = {10.1364/OE.16.012688},
	author = {Oto Brzobohat{\'y} and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek}
}
@article { JonasEPH08,
	title = {Light at work: The use of optical forces for particle	manipulation, sorting, and analysis.},
	journal = {Electophoresis},
	volume = {29},
	year = {2008},
	pages = {4813{\textendash}4851},
	keywords = {MF},
	doi = {10.1002/elps.200800484},
	author = {A. Jon{\'a}{\v s} and P. Zem{\'a}nek}
}
@article { KarasekPRL08,
	title = {Long-range one-dimensional longitudinal optical	binding},
	journal = {Phys. Rev. Lett.},
	volume = {101},
	number = {14},
	year = {2008},
	pages = {143601},
	keywords = {MF},
	issn = {0031-9007},
	doi = {10.1103/PhysRevLett.101.143601},
	author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and Oto Brzobohat{\'y} and P. Zem{\'a}nek and V. Garc{\'e}s-Ch{\'a}vez and Kishan Dholakia}
}
@article { JaklAPL08,
	title = {Static optical sorting in a laser interference field},
	journal = {Appl. Phys. Lett.},
	volume = {92},
	number = {16},
	year = {2008},
	pages = {161110:1{\textendash}3},
	keywords = {MF},
	issn = {0003-6951},
	doi = {10.1063/1.2913759},
	author = {P J{\'a}kl and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M. {\v S}er{\'y} and P. Zem{\'a}nek}
}
@article { SilerNJP08,
	title = {Surface delivery of a single nanoparticle under moving	evanescent standing-wave illumination},
	journal = {New. J. Phys.},
	volume = {10},
	year = {2008},
	pages = {113010},
	keywords = {MF},
	issn = {1367-2630},
	doi = {10.1088/1367-2630/10/11/113010},
	author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and A. Jon{\'a}{\v s} and P. Zem{\'a}nek}
}
@article { KarasekJOPA07,
	title = {Analytical description of longitudinal optical binding of two spherical nanoparticles},
	journal = {J. Opt. A: Pure Appl. Opt.},
	volume = {9},
	year = {2007},
	pages = {S215{\textendash}S220},
	keywords = {MF},
	doi = {10.1088/1464-4258/9/8/S14},
	author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and P. Zem{\'a}nek}
}
@article { JaklJOPAA07,
	title = {Axial optical trap stiffness influenced by retro-reflected beam},
	journal = {J. Opt. A: Pure Appl. Opt.},
	volume = {9},
	number = {8, Sp. Iss. SI},
	year = {2007},
	pages = {S251{\textendash}S255},
	keywords = {MF},
	issn = {1464-4258},
	doi = {10.1088/1464-4258/9/8/S19},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka and P. Zem{\'a}nek}
}
@article { DholakiaMCB07,
	title = {Cellular and colloidal separation using optical forces},
	journal = {Methods in Cell Biology},
	volume = {82},
	year = {2007},
	pages = {467{\textendash}495},
	keywords = {MF},
	doi = {10.1016/S0091-679X(06)82017-0},
	author = {Kishan Dholakia and MacDonald, M. P. and P. Zem{\'a}nek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r}
}
@article { SilerOC07,
	title = {Optical forces acting on a nanoparticle placed into an interference evanescent field},
	journal = {Opt. Commun.},
	volume = {275},
	year = {2007},
	pages = {409{\textendash}420},
	keywords = {MF},
	doi = {10.1016/j.optcom.2007.03.074},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { CizmarOE07,
	title = {Optical tracking of spherical micro-objects in spatially periodic interference fields},
	journal = {Opt. Express},
	volume = {15},
	year = {2007},
	pages = {2262{\textendash}2272},
	keywords = {MF},
	doi = {10.1364/OE.15.002262},
	author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek}
}
@article { JaklJOAM07,
	title = {Opto-fluidic micromanipulation system based on integrated polymer waveguides},
	journal = {J. Optoel Adv. Mater.},
	volume = {9},
	year = {2007},
	pages = {2148-2151},
	keywords = {MF},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and P. Zem{\'a}nek and Ormos, P. and Valkai, S. and Kelemen, L.}
}
@article { MilneOE07,
	title = {Transverse particle dynamics in a Bessel beam},
	journal = {Opt. Express},
	volume = {15},
	number = {21},
	year = {2007},
	pages = {13972{\textendash}13987},
	publisher = {OSA},
	keywords = {MF},
	doi = {10.1364/OE.15.013972},
	url = {http://www.opticsexpress.org/abstract.cfm?URI=oe-15-21-13972},
	author = {Milne, Graham and Kishan Dholakia and McGloin, David and Karen Volke-Sep{\'u}lveda and P. Zem{\'a}nek}
}
@article {KarasekAPB06,
	title = {Analysis of optical binding in one dimension},
	journal = {Appl. Phys. B},
	volume = {84},
	year = {2006},
	pages = {149{\textendash}156},
	keywords = {MF},
	doi = {10.1007/s00340-006-2297-8},
	author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and Kishan Dholakia and P. Zem{\'a}nek}
}
@article {JezekOE06,
	title = {Formation of long and thin polymer fiber using nondiffracting beam},
	journal = {Opt. Express},
	volume = {14},
	year = {2006},
	pages = {8506-8515},
	keywords = {MF},
	doi = {10.1364/OE.14.008506},
	author = {J Je{\v z}ek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V. Ned{\v e}la and P. Zem{\'a}nek}
}
@article {SilerAPB06,
	title = {Optical forces generated by evanescent standing waves and their usage for sub-micron particle delivery},
	journal = {Appl. Phys. B},
	volume = {84},
	year = {2006},
	pages = {157{\textendash}165},
	keywords = {MF},
	doi = {10.1007/s00340-006-2235-9},
	author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M. {\v S}er{\'y} and P. Zem{\'a}nek}
}
@article {CizmarAPB06,
	title = {An optical nanotrap array movable over a milimetre range},
	journal = {Appl. Phys. B},
	volume = {84},
	year = {2006},
	pages = {197{\textendash}203},
	keywords = {MF},
	doi = {10.1007/s00340-006-2221-2},
	author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M {\v S}iler and P. Zem{\'a}nek}
}
@article {CizmarPRB06,
	title = {Optical sorting and detection of sub-micron objects in a motional standing wave},
	journal = {Phys. Rev. B},
	volume = {74},
	year = {2006},
	pages = {035105:1-6},
	keywords = {MF},
	doi = {10.1103/PhysRevB.74.035105},
	author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M {\v S}iler and M. {\v S}er{\'y} and P. Zem{\'a}nek and V. Garc{\'e}s-Ch{\'a}vez and Kishan Dholakia}
}
@article {CizmarNJP06,
	title = {Sub-micron particle organization by self-imaging of non-diffracting beams},
	journal = {New. J. Phys.},
	volume = {8},
	year = {2006},
	pages = {43},
	keywords = {MF},
	doi = {10.1088/1367-2630/8/3/043},
	author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V. Koll{\'a}rov{\'a} and Zden{\v e}k Bouchal and P. Zem{\'a}nek}
}
@article {CizmarAPL05,
	title = {Optical conveyor belt for delivery of submicron objects},
	journal = {Appl. Phys. Lett.},
	volume = {86},
	year = {2005},
	pages = {174101-1{\textendash}174101-3},
	keywords = {MF},
	doi = {10.1063/1.1915543},
	author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V. Garc{\'e}s-Ch{\'a}vez and Kishan Dholakia and P. Zem{\'a}nek}
}
@article {CasaburiOC05,
	title = {Two-and three-beam interferometric optical tweezers},
	journal = {Opt. Commun.},
	volume = {251},
	year = {2005},
	pages = {393{\textendash}404},
	keywords = {MF},
	doi = {10.1016/j.optcom.2005.03.029},
	author = {A. Casaburi and G. Pesce and P. Zem{\'a}nek and A. Sasso}
}
@article {ZemanekOPTCOMM04,
	title = {Optical forces acting on Rayleigh particle placed into interference field},
	journal = {Opt. Commun.},
	volume = {240},
	year = {2004},
	pages = {401-415},
	keywords = {MF},
	doi = {10.1016/j.optcom.2004.06.051},
	author = {P. Zem{\'a}nek and V{\'\i}t{\v e}zslav Kar{\'a}sek and A. Sasso}
}
@article {JaklJMO03,
	title = {Behaviour of an optically trapped probe approaching a dielectric interface},
	journal = {J Mod. Optics},
	volume = {50},
	year = {2003},
	pages = {1615-1625},
	keywords = {MF},
	doi = {10.1080/09500340308235235},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and A. Jon{\'a}{\v s} and M. Li{\v s}ka and P. Zem{\'a}nek}
}
@article {ZemanekOPTCOMM03,
	title = {Theoretical comparison of optical traps created by standing wave and single beam},
	journal = {Opt. Commun.},
	volume = {220},
	year = {2003},
	pages = {401-412},
	keywords = {MF},
	doi = {10.1016/S0030-4018(03)01409-3},
	author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka}
}
@article {ZemanekJOSAA02,
	title = {Simplified description of optical forces acting on a nanoparticle in the Gaussian standing wave},
	journal = {J. Opt. Soc. Am. A},
	volume = {19},
	year = {2002},
	pages = {1025-1034},
	keywords = {MF},
	doi = {10.1364/JOSAA.19.001025},
	author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and M. Li{\v s}ka}
}
@article {JonasOL01,
	title = {Single beam trapping in front of reflective surfaces},
	journal = {Opt. Lett.},
	volume = {26},
	year = {2001},
	pages = {1466{\textendash}1468},
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}
