@article {3864, title = {Biomedical Optics Express Feature Issue Introduction: Optical Manipulation and Its Applications (OMA) 2023}, journal = {BIOMEDICAL OPTICS EXPRESS}, volume = {15}, year = {2024}, month = {FEB 1}, pages = {1192-1194}, keywords = {BF, MF}, issn = {2156-7085}, doi = {10.1364/BOE.519305}, author = {Jones, Philip and Bernatov{\'a}, Silvie and Kotsifaki, Domna G.} } @article {3992, title = {Microplastics in animal nutrition: Occurrence, spread, and hazard in animals}, journal = {JOURNAL OF AGRICULTURE AND FOOD RESEARCH}, volume = {17}, year = {2024}, month = {SEP}, pages = {101258}, keywords = {BF, MF}, issn = {2666-1543}, doi = {10.1016/j.jafr.2024.101258}, author = {Khan, Aamir and Qadeer, Abdul and Wajid, Abdul and Ullah, Qudrat and Rahman, Sajid Ur and Ullah, Kaleem and Safi, Sher Zaman and Ticha, Lenka and Skalickova, Sylvie and Chilala, Pompido and Bernatov{\'a}, Silvie and Samek, Ota and Horky, Pavel} } @article {3865, title = {Unraveling the ecotoxicological effects of micro and nano-plastics on aquatic organisms and human health}, journal = {Frontiers in Environmental Science}, volume = {12}, year = {2024}, abstract = {

Plastic pollution ranks among the most severe environmental disasters caused by humans, generating millions of tonnes of waste annually. The extensive and unregulated use of plastics has led to ecotoxicity and environmental imbalance. Microplastics (MPs) are prevalent in aquatic environments, and these MPs further degrade into even smaller particles known as nano-plastics (NPs). Both MPs and NPs impact the environment by readily absorbing organic pollutants and pathogens from their surroundings, owing to their bigger surface area to volume ratio. This review focuses on the source of origin, bioaccumulation, and potential impact of MPs and NPs on aquatic organisms and human health. Additionally, the review explores various methods employed for identification and quantification of these particles in aquatic ecosystems. Sufficient information is available on their characteristics, distributions, and effects on marine ecosystems compared with freshwater ecosystems. For plastic particles \<10\ μm, more toxicological effects were observed compared with larger size particles, in aquatic life. Understanding the mechanism of action and ecotoxicological effects of micro/nano-plastics on the health of aquatic life across various trophic levels, as well as human health, is of utmost importance. We address knowledge gaps and provide insights into future research approaches for a better understanding of the interactive mechanisms between binary pollutants.

}, keywords = {BF, MF}, issn = {2296-665X}, doi = {10.3389/fenvs.2024.1390510}, url = {https://www.frontiersin.org/articles/10.3389/fenvs.2024.1390510}, author = {Naz, Saima and Chatha, Ahmad Manan Mustafa and Khan, Nisar Ahmed and Ullah, Qudrat and Zaman, Faisal and Qadeer, Abdul and Khan, Ibrar Muhammad and Danabas, Durali and Kiran, Azka and Skalickova, Sylvie and Bernatov{\'a}, Silvie and Khan, Muhammad Zahoor and Horky, Pavel} } @article {3728, title = {SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering}, journal = {Biosensors}, volume = {13}, year = {2023}, pages = {182}, keywords = {BF, MF}, issn = {2079-6374}, doi = {10.3390/bios13020182}, url = {https://www.mdpi.com/2079-6374/13/2/182}, author = {Bene{\v s}ov{\'a}, Mark{\'e}ta and Bernatov{\'a}, Silvie and Mika, Filip and Pokorn{\'a}, Zuzana and Je{\v z}ek, Jan and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Rebro{\v s}ov{\'a}, Katar{\'\i}na and Zem{\'a}nek, Pavel and Pil{\'a}t, Zden{\v e}k} } @article {3575, title = {Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings}, journal = {FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY}, volume = {12}, year = {2022}, month = {APR 22}, pages = {866463}, keywords = {BF, MF}, issn = {2235-2988}, doi = {10.3389/fcimb.2022.866463}, author = {Rebro{\v s}ov{\'a}, Katar{\'\i}na and Samek, Ota and Kizovsk{\'y}, Martin and Bernatov{\'a}, Silvie and Hol{\'a}, Veronika and R{\r u}{\v z}i{\v c}ka, Filip} } @article {3481, title = {Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field}, journal = {ACS Applied Materials \& Interfaces}, volume = {13}, year = {2021}, month = {OCT 21}, pages = {50657-50667}, keywords = {BF, LF, MF}, doi = {10.1021/acsami.1c11936}, author = {Jonas, Alexandr and Pil{\'a}t, Zden{\v e}k and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Jedli{\v c}ka, Petr and Aas, Mehdi and Kiraz, Alper and Zem{\'a}nek, Pavel} } @article {3459, title = {The potential of SERS as an AST methodology in clinical settings}, journal = {NANOPHOTONICS}, volume = {10}, year = {2021}, month = {AUG}, pages = {2537-2561}, keywords = {BF, MF}, issn = {2192-8606}, doi = {10.1515/nanoph-2021-0095}, author = {Samek, Ota and Bernatov{\'a}, Silvie and Dohnal, Fadi} } @article {3417, title = {Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris}, journal = {Biosensors}, volume = {11}, year = {2021}, pages = {115}, keywords = {BF, MF}, issn = {2079-6374}, doi = {10.3390/bios11040115}, url = {https://www.mdpi.com/2079-6374/11/4/115}, author = {Kizovsk{\'y}, Martin and Pil{\'a}t, Zden{\v e}k and Mylenko, Mykola and Hrouzek, Pavel and Kuta, Jan and Skoup{\'y}, Radim and Krzy{\v z}{\'a}nek, Vladislav and Hrubanov{\'a}, Kamila and Adamczyk, Olga and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Klementov{\'a}, Tereza and Gjevik, Al{\v z}b{\v e}ta and {\v S}iler, Martin and Samek, Ota and Zem{\'a}nek, Pavel} } @article {3189, title = {Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy}, journal = {Future Microbiology}, volume = {14}, year = {2019}, pages = {509-517}, abstract = {

Aim: Finding rapid, reliable diagnostic methods is a big challenge in clinical microbiology. Raman spectroscopy is an optical method used for multiple applications in scientific fields including microbiology. This work reports its potential in identifying biofilm positive strains of Candida parapsilosis and Staphylococcus epidermidis. Materials \& methods: We tested 54 S. epidermidis strains (23 biofilm positive, 31 negative) and 51 C. parapsilosis strains (27 biofilm positive, 24 negative) from colonies on Mueller-Hinton agar plates, using Raman spectroscopy. Results: The accuracy was 98.9\% for C. parapsilosis and 96.1\% for S. epidermidis. Conclusion: The method showed great potential for identifying biofilm positive bacterial and yeast strains. We suggest that Raman spectroscopy might become a useful aid in clinical diagnostics.

}, keywords = {BF, KF, MF}, doi = {10.2217/fmb-2018-0297}, url = {https://doi.org/10.2217/fmb-2018-0297}, author = {Rebro{\v s}ov{\'a}, Katar{\'\i}na and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Bernatov{\'a}, Silvie and Je{\v z}ek, Jan and Zem{\'a}nek, Pavel and Hol{\'a}, Veronika} } @article {3104, title = {Wavelength-Dependent Optical Force Aggregation of Gold Nanorods for SERS in a Microfluidic Chip}, journal = {J. Phys. Chem. C}, volume = {123}, year = {2019}, pages = {5608-5615}, keywords = {BF, MF}, doi = {10.1021/acs.jpcc.8b12493}, author = {Bernatov{\'a}, Silvie and Donato, Maria Grazia and Je{\v z}ek, Jan and Pil{\'a}t, Z. and Samek, Ota and Magazzu, Alessandro and Marag{\`o}, Onofrio M. and Zem{\'a}nek, Pavel and Gucciardi, Pietro G.} }
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