@article {3991, title = {MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data}, journal = {NATURE MICROBIOLOGY}, volume = {9}, year = {2024}, month = {MAY}, keywords = {BF, MF}, issn = {2058-5276}, doi = {10.1038/s41564-024-01656-3}, author = {Lee, Kang Soo and Landry, Zachary and Athar, Awais and Alcolombri, Uria and Ayutthaya, Pratchaya Pramoj Na and Berry, David and de Bettignies, Philippe and Cheng, Ji-Xin and Csucs, Gabor and Cui, Li and Deckert, Volker and Dieing, Thomas and Dionne, Jennifer and Doskocil, Ondrej and D{\textquoteright}Souza, Glen and Garcia-Timermans, Cristina and Gierlinger, Notburga and Goda, Keisuke and Hatzenpichler, Roland and Henshaw, Richard J. and Huang, Wei E. and Iermak, Ievgeniia and Ivleva, Natalia P. and Kneipp, Janina and Kubryk, Patrick and Kuesel, Kirsten and Lee, Tae Kwon and Lee, Sung Sik and Ma, Bo and Martinez-Perez, Clara and Matousek, Pavel and Meckenstock, Rainer U. and Min, Wei and Mojzes, Peter and Mueller, Oliver and Kumar, Naresh and Nielsen, Per Halkjaer and Notingher, Ioan and Palatinszky, Marton and Pereira, Fatima C. and Pezzotti, Giuseppe and Pil{\'a}t, Zden{\v e}k and Plesinger, Filip and Popp, Juergen and Probst, Alexander J. and Riva, Alessandra and Saleh, Amr. A. E. and Samek, Ota and Sapers, Haley M. and Schubert, Olga T. and Stubbusch, Astrid K. M. and Tadesse, Loza F. and Taylor, Gordon T. and Wagner, Michael and Wang, Jing and Yin, Huabing and Yue, Yang and Zenobi, Renato and Zini, Jacopo and Sarkans, Ugis and Stocker, Roman} } @article {3992, title = {Microplastics in animal nutrition: Occurrence, spread, and hazard in animals}, journal = {JOURNAL OF AGRICULTURE AND FOOD RESEARCH}, volume = {17}, year = {2024}, month = {SEP}, pages = {101258}, keywords = {BF, MF}, issn = {2666-1543}, doi = {10.1016/j.jafr.2024.101258}, author = {Khan, Aamir and Qadeer, Abdul and Wajid, Abdul and Ullah, Qudrat and Rahman, Sajid Ur and Ullah, Kaleem and Safi, Sher Zaman and Ticha, Lenka and Skalickova, Sylvie and Chilala, Pompido and Bernatov{\'a}, Silvie and Samek, Ota and Horky, Pavel} } @article {3773, title = {Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis}, journal = {Frontiers in Microbiology}, volume = {14}, year = {2023}, keywords = {BF, MF}, doi = {10.3389/fmicb.2023.1272734}, url = {https://www.frontiersin.org/articles/10.3389/fmicb.2023.1272734}, author = {Siems, Katharina and Runzheimer, Katharina and Rebro{\v s}ov{\'a}, Katar{\'\i}na and Etzbach, Lara and Auerhammer, Alina and Rehm, Anna and Schwengers, Oliver and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Moeller, Ralf} } @article {3728, title = {SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering}, journal = {Biosensors}, volume = {13}, year = {2023}, pages = {182}, keywords = {BF, MF}, issn = {2079-6374}, doi = {10.3390/bios13020182}, url = {https://www.mdpi.com/2079-6374/13/2/182}, author = {Bene{\v s}ov{\'a}, Mark{\'e}ta and Bernatov{\'a}, Silvie and Mika, Filip and Pokorn{\'a}, Zuzana and Je{\v z}ek, Jan and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Rebro{\v s}ov{\'a}, Katar{\'\i}na and Zem{\'a}nek, Pavel and Pil{\'a}t, Zden{\v e}k} } @article {3575, title = {Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings}, journal = {FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY}, volume = {12}, year = {2022}, month = {APR 22}, pages = {866463}, keywords = {BF, MF}, issn = {2235-2988}, doi = {10.3389/fcimb.2022.866463}, author = {Rebro{\v s}ov{\'a}, Katar{\'\i}na and Samek, Ota and Kizovsk{\'y}, Martin and Bernatov{\'a}, Silvie and Hol{\'a}, Veronika and R{\r u}{\v z}i{\v c}ka, Filip} } @article {3459, title = {The potential of SERS as an AST methodology in clinical settings}, journal = {NANOPHOTONICS}, volume = {10}, year = {2021}, month = {AUG}, pages = {2537-2561}, keywords = {BF, MF}, issn = {2192-8606}, doi = {10.1515/nanoph-2021-0095}, author = {Samek, Ota and Bernatov{\'a}, Silvie and Dohnal, Fadi} } @article {3417, title = {Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris}, journal = {Biosensors}, volume = {11}, year = {2021}, pages = {115}, keywords = {BF, MF}, issn = {2079-6374}, doi = {10.3390/bios11040115}, url = {https://www.mdpi.com/2079-6374/11/4/115}, author = {Kizovsk{\'y}, Martin and Pil{\'a}t, Zden{\v e}k and Mylenko, Mykola and Hrouzek, Pavel and Kuta, Jan and Skoup{\'y}, Radim and Krzy{\v z}{\'a}nek, Vladislav and Hrubanov{\'a}, Kamila and Adamczyk, Olga and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Klementov{\'a}, Tereza and Gjevik, Al{\v z}b{\v e}ta and {\v S}iler, Martin and Samek, Ota and Zem{\'a}nek, Pavel} } @article {3460, title = {The Use of Raman Spectroscopy to Monitor Metabolic Changes in Stressed Metschnikowia sp. Yeasts}, journal = {Microorganisms}, volume = {9}, year = {2021}, pages = {277}, abstract = {

Raman spectroscopy is a universal method designed for the analysis of a wide range of physical, chemical and biological systems or various surfaces. This technique is suitable to monitor various components of cells, tissues or microorganisms. The advantages include very fast non-contact and non-destructive analysis and no or minimal need for sample treatment. The yeasts Metschnikowia can be considered as industrially usable producers of pulcherrimin or single-cell lipids, depending on cultivation conditions and external stress. In the present study, Raman spectroscopy was used as an effective tool to identify both pulcherrimin and lipids in single yeast cells. The analysis of pulcherrimin is very demanding; so far, there is no optimal procedure to analyze or identify this pigment. Based on results, the strong dependence of pulcherrimin production on the ferric ion concentration was found with the highest yield in media containing 0.1 g/L iron. Further, production of lipids in Metschnikowia cells was studied at different temperatures and C:N ratios, using Raman spectroscopy to follow fatty acids composition, under different regimes, by monitoring the iodine number. The results of Raman spectroscopy were comparable with the fatty acid analysis obtained by gas chromatography. This study therefore supported use of Raman spectroscopy for biotechnological applications as a simple tool in the identification and analysis both the pulcherrimin and microbial lipids. This method provides a quick and relatively accurate estimation of targeted metabolites with minimal sample modification and allows to monitor metabolic changes over time of cultivation.

}, keywords = {BF, MF}, issn = {2076-2607}, doi = {10.3390/microorganisms9020277}, url = {https://www.mdpi.com/2076-2607/9/2/277}, author = {N{\v e}mcov{\'a}, Andrea and Gonov{\'a}, Dominika and Samek, Ota and Sipiczki, Matthias and Breierov{\'a}, Emilia and M{\'a}rov{\'a}, Ivana} } @article {3482, title = {Use of Waste Substrates for the Lipid Production by Yeasts of the Genus Metschnikowia{\textemdash}Screening Study}, journal = {Microorganisms}, volume = {9}, year = {2021}, pages = {2295}, abstract = {

Oleogenic yeasts are characterized by the ability to accumulate increased amounts of lipids under certain conditions. These microbial lipids differ in their fatty acid composition, which allows them to be widely used in the biotechnology industry. The interest of biotechnologists is closely linked to the rising prices of fossil fuels in recent years. Their negative environmental impact is caused by significantly increased demand for biodiesel. The composition of microbial lipids is very similar to vegetable oils, which provides great potential for use in the production of biodiesel. In addition, some oleogenic microorganisms are capable of producing lipids with a high proportion of unsaturated fatty acids. The presented paper{\textquoteright}s main aim was to study the production of lipids and lipid substances by yeasts of the genus Metschnikowia, to cultivate crude waste animal fat to study its utilization by yeasts, and to apply the idea of circular economy in the biotechnology of Metschnikowia yeasts. The work focuses on the influence of various stress factors in the cultivation process, such as reduced temperature or nutritional stress through the use of various waste substrates, together with manipulating the ratio of carbon and nitrogen sources in the medium. Yeast production properties were monitored by several instrumental techniques, including gas chromatography and Raman spectroscopy. The amount of lipids and in particular the fatty acid composition varied depending on the strains studied and the culture conditions used. The ability of yeast to produce significant amounts of unsaturated fatty acids was also demonstrated in the work. The most suitable substrate for lipid production was a medium containing glycerol, where the amount of accumulated lipids in the yeast M. pulcherrima 1232 was up to 36\%. In our work, the crude animal fat was used for the production of high-value lipids, which to the best of our knowledge is a new result. Moreover, quantitative screening of lipase enzyme activity cultivated on animal fat substrate on selected yeasts of the genus Metschnikowia was performed. We found that for the yeast utilizing glycerol, animal fat seems to be an excellent source of carbon. Therefore, the yeast conversion of crude processed animal fat to value-added products is a valuable process for the biotechnology and food industry.

}, keywords = {BF, MF}, issn = {2076-2607}, doi = {10.3390/microorganisms9112295}, url = {https://www.mdpi.com/2076-2607/9/11/2295}, author = {N{\v e}mcov{\'a}, Andrea and Szotkowski, Martin and Samek, Ota and Cag{\'a}{\v n}ov{\'a}, Linda and Sipiczki, Matthias and M{\'a}rov{\'a}, Ivana} } @article {3189, title = {Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy}, journal = {Future Microbiology}, volume = {14}, year = {2019}, pages = {509-517}, abstract = {

Aim: Finding rapid, reliable diagnostic methods is a big challenge in clinical microbiology. Raman spectroscopy is an optical method used for multiple applications in scientific fields including microbiology. This work reports its potential in identifying biofilm positive strains of Candida parapsilosis and Staphylococcus epidermidis. Materials \& methods: We tested 54 S. epidermidis strains (23 biofilm positive, 31 negative) and 51 C. parapsilosis strains (27 biofilm positive, 24 negative) from colonies on Mueller-Hinton agar plates, using Raman spectroscopy. Results: The accuracy was 98.9\% for C. parapsilosis and 96.1\% for S. epidermidis. Conclusion: The method showed great potential for identifying biofilm positive bacterial and yeast strains. We suggest that Raman spectroscopy might become a useful aid in clinical diagnostics.

}, keywords = {BF, KF, MF}, doi = {10.2217/fmb-2018-0297}, url = {https://doi.org/10.2217/fmb-2018-0297}, author = {Rebro{\v s}ov{\'a}, Katar{\'\i}na and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Bernatov{\'a}, Silvie and Je{\v z}ek, Jan and Zem{\'a}nek, Pavel and Hol{\'a}, Veronika} } @article {3104, title = {Wavelength-Dependent Optical Force Aggregation of Gold Nanorods for SERS in a Microfluidic Chip}, journal = {J. Phys. Chem. C}, volume = {123}, year = {2019}, pages = {5608-5615}, keywords = {BF, MF}, doi = {10.1021/acs.jpcc.8b12493}, author = {Bernatov{\'a}, Silvie and Donato, Maria Grazia and Je{\v z}ek, Jan and Pil{\'a}t, Z. and Samek, Ota and Magazzu, Alessandro and Marag{\`o}, Onofrio M. and Zem{\'a}nek, Pavel and Gucciardi, Pietro G.} } @article { SedlacekAMB19, title = {What keeps polyhydroxyalkanoates in bacterial cells amorphous? A derivation from stress exposure experiments}, journal = {Appl. Microbiol. Biotech.}, volume = {103}, number = {4}, year = {2019}, pages = {1905-1917}, keywords = {BF, MF}, doi = {10.1007/s00253-018-09584-z}, author = {P. Sedl{\'a}{\v c}ek and Slaninov{\'a}, E. and Enev, V. and Koller, M. and J. Nebes{\'a}{\v r}ov{\'a} and I. M{\'a}rov{\'a} and K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and S. Obru{\v c}a} } @article { ProchazkaSAB18, title = {Combination of laser-induced breakdown spectroscopy and Raman spectroscopy for multivariate classification of bacteria}, journal = {Spec. Acta Part B}, volume = {139}, year = {2018}, pages = {6-12}, keywords = {BF, MF}, doi = {10.1016/j.sab.2017.11.004}, author = {D. Proch{\'a}zka and M. Mazura and O. Samek and K. Rebro{\v s}ov{\'a} and P. Po{\v r}{\'\i}zka and J. Klus and P. Proch{\'a}zkov{\'a} and J. Novotn{\'y} and K. Novotn{\'y} and J. Kaiser} } @article { PilatSENS18SERS, title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips}, journal = {Sensors}, volume = {18}, year = {2018}, pages = {3212}, keywords = {BF, MF}, doi = {10.3390/s18103212}, author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek} } @article { PilatSENS18Ecoli, title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress}, journal = {Sensors}, volume = {18}, year = {2018}, pages = {1623}, keywords = {BF, MF}, doi = {10.3390/s18051623}, author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and Kirchhoff, J. and Tannert, A. and Neugebauer, U. and O. Samek and P. Zem{\'a}nek} } @article { HrubanovaSENS18, title = {Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy}, journal = {Sensors}, volume = {18}, number = {12}, year = {2018}, pages = {4089}, keywords = {BF, MF}, doi = {10.3390/s18124089}, author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and F. R{\r u}{\v z}i{\v c}ka and Z. Pil{\'a}t and O. Samek} } @article {RebrosovsaFB17, title = {Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy}, journal = {Future Microbiology}, volume = {12}, year = {2017}, pages = {10}, keywords = {BF, MF}, doi = {10.2217/fmb-2016-0224}, author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and Silva Bernatov{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and V. Hol{\'a}} } @article {HrubanovaMM17, title = {Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy}, journal = {Microscopy and Microanalysis}, volume = {23}, year = {2017}, pages = {S1}, keywords = {BF, MF}, doi = {10.1017/S1431927617006456}, author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and R. Skoup{\'y} and M {\v S}iler and J Je{\v z}ek and S. Obru{\v c}a and P. Zem{\'a}nek} } @article {ObrucaNB17, title = {The presence of PHB granules in cytoplasm protects non-halophilic bacterial cells against the harmful impact of hypertonic environments}, journal = {New Biotechnol.}, volume = {39}, year = {2017}, pages = {10}, keywords = {BF, MF}, doi = {10.1016/j.nbt.2017.07.008}, author = {S. Obru{\v c}a and P. Sedl{\'a}{\v c}ek and F. Mravec and V. Krzy{\v z}{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and O. Samek and D. Ku{\v c}era and Pavla Bene{\v s}ov{\'a} and K. Hrubanov{\'a} and M. Milerov{\'a} and I. M{\'a}rov{\'a}} } @article {RebrosovaSR17, title = {Rapid identification of staphylococci by Raman spectroscopy}, journal = {Sci. Rep.}, volume = {7}, year = {2017}, pages = {14846}, keywords = {BF, MF}, doi = {10.1038/s41598-017-13940-w}, author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and S. Bernatov{\'a} and V. Hol{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and J. Sokolov{\'a} and P. Petr{\'a}{\v s}} } @article { MravecFEMSML16, title = {Accumulation of PHA granules in Cupriavidus necator as seen by confocal fluorescence microscopy}, journal = {FEMS Microbiology Letters}, volume = {363}, year = {2016}, pages = {10}, keywords = {MF}, doi = {10.1093/femsle/fnw094}, author = {F. Mravec and S. Obru{\v c}a and V. Krzy{\v z}{\'a}nek and P. Sedl{\'a}{\v c}ek and K. Hrubanov{\'a} and O. Samek and D. Ku{\v c}era and Pavla Bene{\v s}ov{\'a} and J. Nebes{\'a}{\v r}ov{\'a}} } @article { ObrucaPLOSONE16, title = {Accumulation of Poly(3-hydroxybutyrate) Helps Bacterial Cells to Survive Freezing}, journal = {PLoS ONE}, volume = {11}, year = {2016}, pages = {e0157778}, keywords = {MF}, doi = {10.1371/journal.pone.0157778}, author = {S. Obru{\v c}a and P. Sedl{\'a}{\v c}ek and V. Krzy{\v z}{\'a}nek and F. Mravec and K. Hrubanov{\'a} and O. Samek and D. Ku{\v c}era and Pavla Bene{\v s}ov{\'a} and I. M{\'a}rov{\'a}} } @article { ObrucaAMB16, title = {Evaluation of 3-hydroxybutyrate as an enzyme-protective agent against heating and oxidative damage and its potential role in stress response of poly(3-hydroxybutyrate) accumulating cells}, journal = {Appl Microbiol Biotechnol}, volume = {100}, year = {2016}, pages = {1365-1376}, keywords = {MF}, doi = {10.1007/s00253-015-7162-4}, author = {S. Obru{\v c}a and P. Sedl{\'a}{\v c}ek and F. Mravec and O. Samek and I. M{\'a}rov{\'a}} } @article { HrubanovaMM16, title = {Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy}, journal = {Microscopy and Microanalysis}, volume = {22}, year = {2016}, pages = {S3}, keywords = {MF}, doi = {10.1017/S1431927616006577}, author = {K. Hrubanov{\'a} and O. Samek and A. Haronikov{\'a} and Silva Bernatov{\'a} and P. Zem{\'a}nek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek} } @article {SamekSENS16, title = {Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16}, journal = {Sensors}, volume = {16}, year = {2016}, pages = {1808}, keywords = {MF}, doi = {10.3390/s16111808}, author = {O. Samek and S. Obru{\v c}a and M {\v S}iler and P. Sedl{\'a}{\v c}ek and Pavla Bene{\v s}ov{\'a} and D. Ku{\v c}era and I. M{\'a}rov{\'a} and J Je{\v z}ek and Silva Bernatov{\'a} and P. Zem{\'a}nek} } @article { KrzyzanekMM15, title = {Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria}, journal = {Microscopy and Microanalysis}, volume = {21}, number = {S3}, year = {2015}, pages = {183-184}, keywords = {MF}, doi = {10.1017/S1431927615001713}, author = {V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and O. Samek and S. Obru{\v c}a and I. M{\'a}rov{\'a} and Silva Bernatov{\'a} and M {\v S}iler and P. Zem{\'a}nek} } @article { SamekJBO15, title = {Identification of individual biofilm-forming bacterial cells using Raman tweezers}, journal = {J. Biomed. Opt.}, volume = {20}, number = {5}, year = {2015}, keywords = {MF}, doi = {10.1117/1.JBO.20.5.051038}, author = {O. Samek and Silva Bernatov{\'a} and J Je{\v z}ek and M {\v S}iler and M. {\v S}er{\'y} and V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and P. Zem{\'a}nek and V. Hol{\'a} and F. R{\r u}{\v z}i{\v c}ka} } @article { MlynarikovaSENS15, title = {Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy}, journal = {Sensors}, volume = {15}, year = {2015}, pages = {29635-29647}, keywords = {MF}, doi = {10.3390/s151129635}, author = {K. Mlynarikov{\'a} and O. Samek and Silva Bernatov{\'a} and F. R{\r u}{\v z}i{\v c}ka and J Je{\v z}ek and A. Haronikov{\'a} and M {\v S}iler and P. Zem{\'a}nek and V. Hol{\'a}} } @article { HrubanovaMM15, title = {Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements}, journal = {Microscopy and Microanalysis}, volume = {21}, year = {2015}, pages = {187-188}, keywords = {MF}, doi = {10.1017/S1431927615001737}, author = {K. Hrubanov{\'a} and Silva Bernatov{\'a} and O. Samek and M. {\v S}er{\'y} and P. Zem{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and F. R{\r u}{\v z}i{\v c}ka and V. Krzy{\v z}{\'a}nek} } @article { BurdikovaDS15, title = {SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry}, journal = {Dairy Sci. Technol.}, volume = {95}, year = {2015}, pages = {687-700}, keywords = {MF}, doi = {10.1007/s13594-015-0253-2}, author = {Z. Burdikov{\'a} and Z. Svindrych and C. Hickey and M. G. Wilkinson and M. A. E. Auty and O. Samek and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and A. Periasamy and J. J. Sheehan} } @article { SamekMM15, title = {SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry}, journal = {Microscopy and Microanalysis}, volume = {21}, year = {2015}, pages = {1775-1776}, keywords = {MF}, doi = {10.1017/S1431927615009654}, author = {O. Samek and A. Haronikov{\'a} and N. Va{\v s}kovicov{\'a} and K. Hrubanov{\'a} and J Je{\v z}ek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek} } @article {PorizkaSENS14, title = {Algal Biomass Analysis by Laser-Based Analytical Techniques{\textemdash}A Review}, journal = {Sensors}, volume = {14}, year = {2014}, pages = {17725-17752}, keywords = {MF}, doi = {10.3390/s140917725}, author = {Po{\v r}{\'\i}zka, P. and P. Proch{\'a}zkov{\'a} and D. Proch{\'a}zka and Sl{\'a}dkov{\'a}, L. and Novotn{\'y}, J. and Petrilak, M. and Brada, M. and O. Samek and Pil{\'a}t, Z. and P. Zem{\'a}nek and Adam, V. and Kizek, R. and Novotn{\'y}, J. and Kaiser, J.} } @article { SamekIJMC14, title = {Candida parapsilosis Biofilm Identification by Raman Spectroscopy}, journal = {Int. J. Mol. Sci.}, volume = {15}, year = {2014}, pages = {23924-23935}, keywords = {MF}, doi = {10.3390/ijms151223924}, author = {O. Samek and K. Mlynarikov{\'a} and Silva Bernatov{\'a} and J Je{\v z}ek and V. Krzy{\v z}{\'a}nek and M {\v S}iler and P. Zem{\'a}nek and F. R{\r u}{\v z}i{\v c}ka and V. Hol{\'a} and M. Mahelov{\'a}} } @article { BernatovaMol13, title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy}, journal = {Molecules}, volume = {18}, year = {2013}, pages = {13188-13199}, keywords = {MF}, doi = {10.3390/molecules181113188}, author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka} } @article {PorizkaSAB12, title = {Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology}, journal = {Spectrochim. Acta B}, volume = {74-75}, year = {2012}, pages = {169-176}, keywords = {MF}, doi = {10.1016/j.sab.2012.06.014}, author = {P. Po{\v r}{\'\i}zka and D. Proch{\'a}zka and Z. Pil{\'a}t and Kraj{\v c}arov{\'a}, L. and J. Kaiser and Malina, R. and J. Novotn{\'y} and P. Zem{\'a}nek and J Je{\v z}ek and M. {\v S}er{\'y} and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and Dobransk{\'a}, K. and K. Novotn{\'y} and M. Trt{\'\i}lek and O. Samek} } @article { PilatJAP2012, title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification}, journal = {J. Appl. Phycol.}, volume = {24}, year = {2012}, pages = {541-546}, keywords = {MF}, doi = {10.1007/s10811-011-9754-4}, author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and M. {\v S}er{\'y} and O. Samek and P. Zem{\'a}nek and L. Nedbal and M. Trt{\'\i}lek} } @article { SamekLPL11, title = {Characterization of oil-producing microalgae using Raman spectroscopy}, journal = {Laser Phys. Lett.}, volume = {8}, year = {2011}, pages = {701{\textendash}709}, keywords = {MF}, doi = {10.1002/lapl.201110060}, author = {O. Samek and P. Zem{\'a}nek and A. Jon{\'a}{\v s} and Telle, H. 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