@article {3991,
	title = {MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data},
	journal = {NATURE MICROBIOLOGY},
	volume = {9},
	year = {2024},
	month = {MAY},
	keywords = {BF, MF},
	issn = {2058-5276},
	doi = {10.1038/s41564-024-01656-3},
	author = {Lee, Kang Soo and Landry, Zachary and Athar, Awais and Alcolombri, Uria and Ayutthaya, Pratchaya Pramoj Na and Berry, David and de Bettignies, Philippe and Cheng, Ji-Xin and Csucs, Gabor and Cui, Li and Deckert, Volker and Dieing, Thomas and Dionne, Jennifer and Doskocil, Ondrej and D{\textquoteright}Souza, Glen and Garcia-Timermans, Cristina and Gierlinger, Notburga and Goda, Keisuke and Hatzenpichler, Roland and Henshaw, Richard J. and Huang, Wei E. and Iermak, Ievgeniia and Ivleva, Natalia P. and Kneipp, Janina and Kubryk, Patrick and Kuesel, Kirsten and Lee, Tae Kwon and Lee, Sung Sik and Ma, Bo and Martinez-Perez, Clara and Matousek, Pavel and Meckenstock, Rainer U. and Min, Wei and Mojzes, Peter and Mueller, Oliver and Kumar, Naresh and Nielsen, Per Halkjaer and Notingher, Ioan and Palatinszky, Marton and Pereira, Fatima C. and Pezzotti, Giuseppe and Pil{\'a}t, Zden{\v e}k and Plesinger, Filip and Popp, Juergen and Probst, Alexander J. and Riva, Alessandra and Saleh, Amr. A. E. and Samek, Ota and Sapers, Haley M. and Schubert, Olga T. and Stubbusch, Astrid K. M. and Tadesse, Loza F. and Taylor, Gordon T. and Wagner, Michael and Wang, Jing and Yin, Huabing and Yue, Yang and Zenobi, Renato and Zini, Jacopo and Sarkans, Ugis and Stocker, Roman}
}
@article {3728,
	title = {SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering},
	journal = {Biosensors},
	volume = {13},
	year = {2023},
	pages = {182},
	keywords = {BF, MF},
	issn = {2079-6374},
	doi = {10.3390/bios13020182},
	url = {https://www.mdpi.com/2079-6374/13/2/182},
	author = {Bene{\v s}ov{\'a}, Mark{\'e}ta and Bernatov{\'a}, Silvie and Mika, Filip and Pokorn{\'a}, Zuzana and Je{\v z}ek, Jan and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Rebro{\v s}ov{\'a}, Katar{\'\i}na and Zem{\'a}nek, Pavel and Pil{\'a}t, Zden{\v e}k}
}
@article {3481,
	title = {Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field},
	journal = {ACS Applied Materials \& Interfaces},
	volume = {13},
	year = {2021},
	month = {OCT 21},
	pages = {50657-50667},
	keywords = {BF, LF, MF},
	doi = {10.1021/acsami.1c11936},
	author = {Jonas, Alexandr and Pil{\'a}t, Zden{\v e}k and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Jedli{\v c}ka, Petr and Aas, Mehdi and Kiraz, Alper and Zem{\'a}nek, Pavel}
}
@article {3417,
	title = {Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris},
	journal = {Biosensors},
	volume = {11},
	year = {2021},
	pages = {115},
	keywords = {BF, MF},
	issn = {2079-6374},
	doi = {10.3390/bios11040115},
	url = {https://www.mdpi.com/2079-6374/11/4/115},
	author = {Kizovsk{\'y}, Martin and Pil{\'a}t, Zden{\v e}k and Mylenko, Mykola and Hrouzek, Pavel and Kuta, Jan and Skoup{\'y}, Radim and Krzy{\v z}{\'a}nek, Vladislav and Hrubanov{\'a}, Kamila and Adamczyk, Olga and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Klementov{\'a}, Tereza and Gjevik, Al{\v z}b{\v e}ta and {\v S}iler, Martin and Samek, Ota and Zem{\'a}nek, Pavel}
}
@article { PilatSENS18SERS,
	title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {3212},
	keywords = {BF, MF},
	doi = {10.3390/s18103212},
	author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek}
}
@article { PilatSENS18Ecoli,
	title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {1623},
	keywords = {BF, MF},
	doi = {10.3390/s18051623},
	author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and Kirchhoff, J. and Tannert, A. and Neugebauer, U. and O. Samek and P. Zem{\'a}nek}
}
@article { HrubanovaSENS18,
	title = {Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy},
	journal = {Sensors},
	volume = {18},
	number = {12},
	year = {2018},
	pages = {4089},
	keywords = {BF, MF},
	doi = {10.3390/s18124089},
	author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and F. R{\r u}{\v z}i{\v c}ka and Z. Pil{\'a}t and O. Samek}
}
@article {PilatSENS17,
	title = {Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System},
	journal = {Sensors},
	volume = {17},
	year = {2017},
	pages = {2640},
	keywords = {BF, MF},
	doi = {10.3390/s17112640},
	author = {Z. Pil{\'a}t and A. Jon{\'a}{\v s} and J Je{\v z}ek and P. Zem{\'a}nek}
}
@article { JonasJOSAB17,
	title = {Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators},
	journal = {J. Opt. Soc. Am. B},
	volume = {34},
	year = {2017},
	pages = {1855-1864},
	keywords = {BF, MF},
	doi = {10.1364/JOSAB.34.001855},
	author = {A. Jon{\'a}{\v s} and Z. Pil{\'a}t and J Je{\v z}ek and Silva Bernatov{\'a} and T. Fo{\v r}t and P. Zem{\'a}nek and Mehdi Aas and Alper Kiraz}
}
@article { SilerOL16,
	title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle},
	journal = {Opt. Lett.},
	volume = {41},
	year = {2016},
	pages = {870-873},
	keywords = {MF},
	doi = {10.1364/OL.41.000870},
	author = {M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article { BernatovaMol13,
	title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy},
	journal = {Molecules},
	volume = {18},
	year = {2013},
	pages = {13188-13199},
	keywords = {MF},
	doi = {10.3390/molecules181113188},
	author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { PilatJPPB13,
	title = {Optical trapping of microalgae at 735{\textendash}1064 nm: Photodamage assessment},
	journal = {J. Photochem. Photobiol. B},
	volume = {121},
	year = {2013},
	pages = {27 - 31},
	keywords = {MF},
	doi = {10.1016/j.jphotobiol.2013.02.006},
	author = {Z. Pil{\'a}t and J Je{\v z}ek and M. {\v S}er{\'y} and M. Trt{\'\i}lek and L. Nedbal and P. Zem{\'a}nek}
}
@article {AasOE13,
	title = {Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching},
	journal = {Opt. Express},
	volume = {21},
	number = {18},
	year = {2013},
	pages = {21380-21394},
	keywords = {MF},
	doi = {10.1364/OE.21.021380},
	author = {Mehdi Aas and A. Jon{\'a}{\v s} and Alper Kiraz and Oto Brzobohat{\'y} and J Je{\v z}ek and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article {PorizkaSAB12,
	title = {Application of laser-induced breakdown spectroscopy to the analysis of	algal biomass for industrial biotechnology},
	journal = {Spectrochim. Acta B},
	volume = {74-75},
	year = {2012},
	pages = {169-176},
	keywords = {MF},
	doi = {10.1016/j.sab.2012.06.014},
	author = {P. Po{\v r}{\'\i}zka and D. Proch{\'a}zka and Z. Pil{\'a}t and Kraj{\v c}arov{\'a}, L. and J. Kaiser and Malina, R. and J. Novotn{\'y} and P. Zem{\'a}nek and J Je{\v z}ek and M. {\v S}er{\'y} and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and Dobransk{\'a}, K. and K. Novotn{\'y} and M. Trt{\'\i}lek and O. Samek}
}
@article { PilatJAP2012,
	title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification},
	journal = {J. Appl. Phycol.},
	volume = {24},
	year = {2012},
	pages = {541-546},
	keywords = {MF},
	doi = {10.1007/s10811-011-9754-4},
	author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and M. {\v S}er{\'y} and O. Samek and P. Zem{\'a}nek and L. Nedbal and M. Trt{\'\i}lek}
}
@article { Samek2010,
	title = {Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo},
	journal = {Sensors},
	volume = {10},
	year = {2010},
	pages = {8635{\textendash}8651},
	keywords = {MF},
	doi = {10.3390/s100908635},
	author = {O. Samek and A. Jon{\'a}{\v s} and Z. Pil{\'a}t and P. Zem{\'a}nek and L. Nedbal and T{\v r}{\'\i}ska, J. and Kotas, P. and M. Trt{\'\i}lek}
}
