@article {3856, title = {Simulation of optomechanical interaction of levitated nanoparticle with photonic crystal micro cavity}, journal = {Opt. Express}, volume = {32}, year = {2024}, month = {Feb}, pages = {7185{\textendash}7196}, abstract = {

We propose and analyze theoretically a promising design of an optical trap for vacuum levitation of nanoparticles based on a one-dimensional (1D) silicon photonic crystal cavity (PhC). The considered cavity has a quadratically modulated width of the silicon wave guiding structure, leading to a calculated cavity quality factor of 8 {\texttimes} 105. An effective mode volume of approximately 0.16 μm3 having the optical field strongly confined outside the silicon structure enables optical confinement on nanoparticle in all three dimensions. The optical forces and particle-cavity optomechanical coupling are comprehensively analyzed for two sizes of silica nanoparticles (100 nm and 150 nm in diameter) and various mode detunings. The value of trapping stiffnesses in the microcavity is predicted to be 5 order of magnitudes higher than that reached for optimized optical tweezers, moreover the linear single photon coupling rate can reach MHz level which is 6 order magnitude larger than previously reported values for common bulk cavities. The theoretical results support optimistic prospects towards a compact chip for optical levitation in vacuum and cooling of translational mechanical degrees of motion for the silica nanoparticle of a diameter of 100 nm.

}, keywords = {LF, MF}, doi = {10.1364/OE.515202}, url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-32-5-7185}, author = {Tade{\'a}{\v s} Ma{\v n}ka and Martin {\v S}iler and Vojt{\v e}ch Li{\v s}ka and Pavel Zem{\'a}nek and Mojm{\'\i}r {\v S}er{\'y} and Oto Brzobohat{\'y}} } @article {3753, title = {Cold damping of levitated optically coupled nanoparticles}, journal = {Optica}, volume = {10}, year = {2023}, pages = {1203{\textendash}1209}, keywords = {LF, MF}, doi = {10.1364/OPTICA.496072}, url = {https://opg.optica.org/optica/abstract.cfm?URI=optica-10-9-1203}, author = {Vojt{\v e}ch Li{\v s}ka and Tereza Zem{\'a}nkov{\'a} and Vojtech Svak and Petr J{\'a}kl and Jan Je{\v z}ek and Martin Br{\'a}neck{\'y} and Stephen H. Simpson and Pavel Zem{\'a}nek and Oto Brzobohat{\'y}} } @article {3755, title = {Cooling the optical-spin driven limit cycle oscillations of a levitated gyroscope}, journal = {Commun. Phys.}, volume = {6}, year = {2023}, month = {Nov}, pages = {238}, keywords = {LF, MF}, author = {Yoshihiko Arita and Stephen H. Simpson and Graham D. Bruce and Ewan M. Wright and Pavel Zem{\'a}nek and Kishan Dholakia} } @article {3787, title = {Physiological and transcriptome profiling of Chlorella sorokiniana: A study on azo dye wastewater decolorization}, journal = {Journal of Hazardous Materials}, volume = {460}, year = {2023}, pages = {132450}, abstract = {

Over decades, synthetic dyes have become increasingly dominated by azo dyes posing a significant environmental risk due to their toxicity. Microalgae-based systems may offer an alternative for treatment of azo dye effluents to conventional physical-chemical methods. Here, microalgae were tested to decolorize industrial azo dye wastewater (ADW). Chlorella sorokiniana showed the highest decolorization efficiency in a preliminary screening test. Subsequently, the optimization of the experimental design resulted in 70\% decolorization in a photobioreactor. Tolerance of this strain was evidenced using multiple approaches (growth and chlorophyll content assays, scanning electron microscopy (SEM), and antioxidant level measurements). Raman microspectroscopy was employed for the quantification of ADW-specific compounds accumulated by the microalgal biomass. Finally, RNA-seq revealed the transcriptome profile of C. sorokiniana exposed to ADW for 72\ h. Activated DNA repair and primary metabolism provided sufficient energy for microalgal growth to overcome the adverse toxic conditions. Furthermore, several transporter genes, oxidoreductases-, and glycosyltransferases-encoding genes were upregulated to effectively sequestrate and detoxify the ADW. This work demonstrates the potential utilization of C. sorokiniana as a tolerant strain for industrial wastewater treatment, emphasizing the regulation of its molecular mechanisms to cope with unfavorable growth conditions.

}, keywords = {BF, MF}, issn = {0304-3894}, doi = {https://doi.org/10.1016/j.jhazmat.2023.132450}, url = {https://www.sciencedirect.com/science/article/pii/S0304389423017338}, author = {Vladimira Tarbajova and Martina Kolackova and Pavel Chaloupsky and Marketa Dobesova and Petr Capal and Zdenek Pilat and Ota Samek and Pavel Zem{\'a}nek and Pavel Svec and Dagmar Skopalova Sterbova and Marketa Vaculovicova and Lukas Richtera and Alfredo P{\'e}rez-de-Mora and Vojtech Adam and Dalibor Huska} } @article {3729, title = {Rapid Identification of Pathogens Causing Bloodstream Infections by Raman Spectroscopy and Raman Tweezers}, journal = {Microbiology Spectrum}, volume = {11}, year = {2023}, pages = {e00028-23}, keywords = {BF, MF}, doi = {10.1128/spectrum.00028-23}, url = {https://journals.asm.org/doi/abs/10.1128/spectrum.00028-23}, author = {Katar{\'\i}na Rebro{\v s}ov{\'a} and Silvie Bernatov{\'a} and Martin {\v S}iler and Jan Ma{\v s}ek and Ota Samek and Jan Je{\v z}ek and Martin Kizovsk{\'y} and Veronika Hol{\'a} and Pavel Zem{\'a}nek and Filip R{\r u}{\v z}i{\v c}ka} } @article {3796, title = {Rapid identification of pathogens in blood serum via Raman tweezers in combination with advanced processing methods}, journal = {Biomed. Opt. Express}, volume = {14}, year = {2023}, month = {Dec}, pages = {6410{\textendash}6421}, keywords = {AIF, BF, LF, MF}, doi = {10.1364/BOE.503628}, url = {https://opg.optica.org/boe/abstract.cfm?URI=boe-14-12-6410}, author = {Ond{\v r}ej Vacul{\'\i}k and Silvie Bernatov{\'a} and Katar{\'\i}na Rebro{\v s}ov{\'a} and Ota Samek and Luk{\'a}{\v s} {\v S}ilhan and Filip R{\r u} {\v z}i{\v c}ka and Mojm{\'\i}r {\v S}er{\'y} and Martin {\v S}iler and Jan Je{\v z} ek and Pavel Zem{\'a}nek} } @article {3730, title = {Roadmap for optical tweezers}, journal = {Journal of Physics: Photonics}, volume = {5}, year = {2023}, month = {apr}, pages = {022501}, keywords = {LF, MF}, doi = {10.1088/2515-7647/acb57b}, url = {https://dx.doi.org/10.1088/2515-7647/acb57b}, author = {Giovanni Volpe and Onofrio M Marag{\`o} and Halina Rubinsztein-Dunlop and Giuseppe Pesce and Alexander B Stilgoe and Giorgio Volpe and Georgiy Tkachenko and Viet Giang Truong and S{\'\i}le Nic Chormaic and Fatemeh Kalantarifard and Parviz Elahi and Mikael K{\"a}ll and Agnese Callegari and Manuel I Marqu{\'e}s and Antonio A R Neves and Wendel L Moreira and Adriana Fontes and Carlos L Cesar and Rosalba Saija and Abir Saidi and Paul Beck and J{\"o}rg S Eismann and Peter Banzer and Thales F D Fernandes and Francesco Pedaci and Warwick P Bowen and Rahul Vaippully and Muruga Lokesh and Basudev Roy and Gregor Thalhammer-Thurner and Monika Ritsch-Marte and Laura P{\'e}rez Garc{\'\i}a and Alejandro V Arzola and Isaac P{\'e}rez Castillo and Aykut Argun and Till M Muenker and Bart E Vos and Timo Betz and Ilaria Cristiani and Paolo Minzioni and Peter J Reece and Fan Wang and David McGloin and Justus C Ndukaife and Romain Quidant and Reece P Roberts and Cyril Laplane and Thomas Volz and Reuven Gordon and Dag Hanstorp and Javier Tello Marmolejo and Graham D Bruce and Kishan Dholakia and Tongcang Li and Oto Brzobohat{\'y} and Stephen H Simpson and Pavel Zem{\'a}nek and Felix Ritort and Yael Roichman and Valeriia Bobkova and Raphael Wittkowski and Cornelia Denz and G V Pavan Kumar and Antonino Foti and Maria Grazia Donato and Pietro G Gucciardi and Lucia Gardini and Giulio Bianchi and Anatolii V Kashchuk and Marco Capitanio and Lynn Paterson and Philip H Jones and Kirstine Berg-S{\o}rensen and Younes F Barooji and Lene B Oddershede and Pegah Pouladian and Daryl Preece and Caroline Beck Adiels and Anna Chiara De Luca and Alessandro Magazz{\`u} and David Bronte Ciriza and Maria Antonia Iat{\`\i} and Grover A Swartzlander} } @article {3606, title = {All-optical sub-Kelvin sympathetic cooling of a levitated microsphere in vacuum}, journal = {Optica}, volume = {9}, year = {2022}, month = {Sep}, pages = {1000{\textendash}1002}, abstract = {

We demonstrate all-optical sympathetic cooling of a laser-trapped microsphere to sub-Kelvin temperatures, mediated by optical binding to a feedback-cooled adjacent particle. Our study opens prospects for multi-particle quantum entanglement and sensing in levitated optomechanics.

}, keywords = {LF, MF}, doi = {10.1364/OPTICA.466337}, url = {https://opg.optica.org/optica/abstract.cfm?URI=optica-9-9-1000}, author = {Y. Arita and G. D. Bruce and E. M. Wright and S. H. Simpson and P. Zem{\'a}nek and K. Dholakia} } @article {3504, title = {Raman spectroscopy{\textemdash}a tool for rapid differentiation among microbes causing urinary tract infections}, journal = {Analytica Chimica Acta}, volume = {1191}, year = {2022}, pages = {339292}, keywords = {BF, KF, MF}, issn = {0003-2670}, doi = {https://doi.org/10.1016/j.aca.2021.339292}, url = {https://www.sciencedirect.com/science/article/pii/S0003267021011181}, author = {Katar{\'\i}na Rebro{\v s}ov{\'a} and Silvie Bernatov{\'a} and Martin {\v S}iler and Magdalena Uhlirova and Ota Samek and Jan Je{\v z}ek and Veronika Hol{\'a} and Filip R{\r u}{\v z}i{\v c}ka and Pavel Zem{\'a}nek} } @article {3416, title = {Stochastic dynamics of optically bound matter levitated in vacuum}, journal = {Optica}, volume = {8}, year = {2021}, month = {Feb}, pages = {220{\textendash}229}, keywords = {LF, MF}, doi = {10.1364/OPTICA.404851}, author = {Vojtech Svak and Jana Flaj{\v s}manov{\'a} and Luk{\'a}{\v s} Chv{\'a}tal and Martin {\v S}iler and Alexandr Jon{\'a}{\v s} and Jan Je{\v z}ek and Stephen H. Simpson and Pavel Zem{\'a}nek and Oto Brzobohat{\'y}} } @article {3363, title = {Complex colloidal structures with non-linear optical properties formed in an optical trap}, journal = {Opt. Express}, volume = {28}, year = {2020}, pages = {37700{\textendash}37707}, keywords = {LF, MF}, author = {Oto Brzobohat{\'y} and Luk{\'a}{\v s} Chv{\'a}tal and Martin {\v S}iler and Pavel Zem{\'a}nek} } @article {DonatoNL19, title = {Optical Trapping, Optical Binding, and Rotational Dynamics of Silicon Nanowires in Counter-Propagating Beams}, journal = {Nano Lett.}, volume = {19}, year = {2019}, pages = {342-352}, keywords = {LF, MF}, doi = {10.1021/acs.nanolett.8b03978}, author = {Donato, Maria G. and Oto Brzobohat{\'y} and S. H. Simpson and Irrera, Alessia and Leonardi, Antonio A. and Lo Faro, Maria J. and Vojtech Svak and Marag{\`o}, Onofrio M. and P. Zem{\'a}nek} } @article { BrzobohatyOL19, title = {Optomechanical properties of optically self-arranged colloidal waveguides}, journal = {Opt. Lett.}, volume = {44}, year = {2019}, pages = {707-710}, keywords = {LF, MF}, doi = {10.1364/OL.44.000707}, author = {Oto Brzobohat{\'y} and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek} } @article {3188, title = {Perspective on light-induced transport of particles: from optical forces to phoretic motion}, journal = {Adv. Opt. Photon.}, volume = {11}, year = {2019}, month = {Sep}, pages = {577{\textendash}678}, keywords = {LF, MF}, doi = {10.1364/AOP.11.000577}, url = {http://aop.osa.org/abstract.cfm?URI=aop-11-3-577}, author = {Pavel Zem{\'a}nek and Giorgio Volpe and Alexandr Jon{\'a}{\v s} and Oto Brzobohat{\'y}} } @article { ArzolaSR19, title = {Spin to orbital light momentum conversion visualized by particle trajectory}, journal = {Sci. Rep.}, volume = {9}, year = {2019}, pages = {4127:1-7}, keywords = {LF, MF}, doi = {10.1038/s41598-019-40475-z}, author = {Alejandro V. Arzola and Luk{\'a}{\v s} Chv{\'a}tal and P J{\'a}kl and P. Zem{\'a}nek} } @article { BrzobohatyACSPHOT19, title = {Tunable Soft-Matter Optofluidic Waveguides Assembled by Light}, journal = {ACS Phot.}, volume = {6}, year = {2019}, pages = {403-410}, keywords = {LF, MF}, doi = {10.1021/acsphotonics.8b01331}, author = {Oto Brzobohat{\'y} and Luk{\'a}{\v s} Chv{\'a}tal and A. Jon{\'a}{\v s} and M {\v S}iler and J. Ka{\v n}ka and J Je{\v z}ek and P. Zem{\'a}nek} } @article { PilatSENS18SERS, title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips}, journal = {Sensors}, volume = {18}, year = {2018}, pages = {3212}, keywords = {BF, MF}, doi = {10.3390/s18103212}, author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek} } @article {SilerPRL18, title = {Diffusing up the Hill: Dynamics and Equipartition in Highly Unstable Systems}, journal = {Phys. Rev. Lett.}, volume = {121}, year = {2018}, pages = {23601}, keywords = {LF, MF}, doi = {10.1103/PhysRevLett.121.230601}, author = {M {\v S}iler and Ornigotti, L. and Oto Brzobohat{\'y} and P J{\'a}kl and Artem Ryabov and Holubec, V. and P. Zem{\'a}nek and Radim Filip} } @article { DamkovaLSA18, title = {Enhancement of the {\textquoteleft}tractor-beam{\textquoteright} pulling force on an optically bound structure}, journal = {Light: Sci. Appl.}, volume = {7}, year = {2018}, pages = {17135}, keywords = {LF, MF}, doi = {10.1038/lsa.2017.135}, author = {Damkov{\'a}, Jana and Luk{\'a}{\v s} Chv{\'a}tal and J Je{\v z}ek and Oulehla, Jindrich and Oto Brzobohat{\'y} and P. Zem{\'a}nek} } @article { PilatSENS18Ecoli, title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress}, journal = {Sensors}, volume = {18}, year = {2018}, pages = {1623}, keywords = {BF, MF}, doi = {10.3390/s18051623}, author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and Kirchhoff, J. and Tannert, A. and Neugebauer, U. and O. Samek and P. Zem{\'a}nek} } @article {SvakNC18, title = {Transverse spin forces and non-equilibrium particle dynamics in a circularly polarized vacuum optical trap}, journal = {Nature Commun.}, volume = {9}, year = {2018}, pages = {5453}, keywords = {LF, MF}, doi = {10.1038/s41467-018-07866-8}, author = {Vojtech Svak and Oto Brzobohat{\'y} and M {\v S}iler and P J{\'a}kl and J. Ka{\v n}ka and P. Zem{\'a}nek and S. H. Simpson} } @article { GargiuloACSNano17, title = {Accuracy and Mechanistic Details of Optical Printing of Single Au and Ag Nanoparticles}, journal = {ACS nano}, volume = {11}, number = {10}, year = {2017}, pages = {9678{\textendash}9688}, keywords = {LF, MF}, doi = {10.1021/acsnano.7b04136}, author = {Gargiulo, Juli{\`a}n and Violi, Ianina L and Cerrota, Santiago and Luk{\'a}{\v s} Chv{\'a}tal and Cort{\`e}s, Emiliano and Perassi, Eduardo M and Diaz, Fernando and P. Zem{\'a}nek and Stefani, Fernando D} } @article {RebrosovsaFB17, title = {Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy}, journal = {Future Microbiology}, volume = {12}, year = {2017}, pages = {10}, keywords = {BF, MF}, doi = {10.2217/fmb-2016-0224}, author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and Silva Bernatov{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and V. Hol{\'a}} } @article { KarasekOL17, title = {Dynamics of an optically bound structure made of particles of unequal sizes}, journal = {Opt. Lett.}, volume = {42}, number = {7}, year = {2017}, pages = {1436-1439}, keywords = {LF, MF}, issn = {0146-9592}, doi = {10.1364/OL.42.001436}, author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Oto Brzobohat{\'y} and P. Zem{\'a}nek} } @article {PilatSENS17, title = {Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System}, journal = {Sensors}, volume = {17}, year = {2017}, pages = {2640}, keywords = {BF, MF}, doi = {10.3390/s17112640}, author = {Z. Pil{\'a}t and A. Jon{\'a}{\v s} and J Je{\v z}ek and P. Zem{\'a}nek} } @article {HrubanovaMM17, title = {Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy}, journal = {Microscopy and Microanalysis}, volume = {23}, year = {2017}, pages = {S1}, keywords = {BF, MF}, doi = {10.1017/S1431927617006456}, author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and R. Skoup{\'y} and M {\v S}iler and J Je{\v z}ek and S. Obru{\v c}a and P. Zem{\'a}nek} } @article { ArzolaPRL17, title = {Omnidirectional Transport in Fully Reconfigurable Two Dimensional Optical Ratchets}, journal = {Phys. Rev. Lett.}, volume = {118}, year = {2017}, pages = {138002}, keywords = {LF, MF}, doi = {10.1103/PhysRevLett.118.138002}, author = {Alejandro V. Arzola and Villasante-Barahona, Mario and Karen Volke-Sep{\'u}lveda and P J{\'a}kl and P. Zem{\'a}nek} } @article { SimpsonNL17, title = {Optical Binding of Nanowires}, journal = {Nano Lett.}, volume = {17}, number = {6}, year = {2017}, pages = {3485-3492}, keywords = {LF, MF}, doi = {10.1021/acs.nanolett.7b00494}, author = {S. H. Simpson and P. Zem{\'a}nek and Marag{\`o}, Onofrio M. and Jones, Philip H. and Hanna, Simon} } @article {RebrosovaSR17, title = {Rapid identification of staphylococci by Raman spectroscopy}, journal = {Sci. Rep.}, volume = {7}, year = {2017}, pages = {14846}, keywords = {BF, MF}, doi = {10.1038/s41598-017-13940-w}, author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and S. Bernatov{\'a} and V. Hol{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and J. Sokolov{\'a} and P. Petr{\'a}{\v s}} } @article { JonasJOSAB17, title = {Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators}, journal = {J. Opt. Soc. Am. B}, volume = {34}, year = {2017}, pages = {1855-1864}, keywords = {BF, MF}, doi = {10.1364/JOSAB.34.001855}, author = {A. Jon{\'a}{\v s} and Z. Pil{\'a}t and J Je{\v z}ek and Silva Bernatov{\'a} and T. Fo{\v r}t and P. Zem{\'a}nek and Mehdi Aas and Alper Kiraz} } @article { SilerSR17, title = {Thermally induced micro-motion by inflection in optical potential}, journal = {Sci. Rep.}, volume = {7}, year = {2017}, pages = {1697}, keywords = {LF, MF}, issn = {2045-2322}, doi = {10.1038/s41598-017-01848-4}, author = {M {\v S}iler and P J{\'a}kl and Oto Brzobohat{\'y} and Artem Ryabov and Radim Filip and P. Zem{\'a}nek} } @article { BrzobohatyOE16, title = {Chiral particles in the dual-beam optical trap}, journal = {Opt. Express}, volume = {24}, year = {2016}, pages = {26382-26391}, keywords = {MF}, doi = {10.1364/OE.24.026382}, author = {Oto Brzobohat{\'y} and Hernandez, Raul Josue and S. H. Simpson and Mazzulla, Alfredo and Cipparrone, Gabriella and P. Zem{\'a}nek} } @article { SilerOL16, title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle}, journal = {Opt. Lett.}, volume = {41}, year = {2016}, pages = {870-873}, keywords = {MF}, doi = {10.1364/OL.41.000870}, author = {M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and Z. Pil{\'a}t and P. Zem{\'a}nek} } @article { TomoriJOpt16, title = {Holographic Raman tweezers controlled by Multimodal Natural User Interface}, journal = {J. Opt.}, volume = {18}, year = {2016}, pages = {015602:1-9}, keywords = {MF}, doi = {10.1088/2040-8978/18/1/015602}, author = {Z. Tomori and P. Ke{\v s}a and M. Nikorovi{\v c} and J. Ka{\v n}ka and P J{\'a}kl and M. {\v S}er{\'y} and Silva Bernatov{\'a} and E. Valu{\v s}ov{\'a} and M. Antal{\'\i}k and P. Zem{\'a}nek} } @article { HrubanovaMM16, title = {Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy}, journal = {Microscopy and Microanalysis}, volume = {22}, year = {2016}, pages = {S3}, keywords = {MF}, doi = {10.1017/S1431927616006577}, author = {K. Hrubanov{\'a} and O. Samek and A. Haronikov{\'a} and Silva Bernatov{\'a} and P. Zem{\'a}nek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek} } @article { ZemanekJOpt16, title = {Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry}, journal = {Journal of Optics}, volume = {18}, number = {6}, year = {2016}, pages = {065402}, keywords = {MF}, doi = {10.1088/2040-8978/18/6/065401}, author = {P. Zem{\'a}nek and M {\v S}iler and Oto Brzobohat{\'y} and P J{\'a}kl and Radim Filip} } @article { FilipJOpt16, title = {Noise-to-signal transition of a Brownian particle in the cubic potential: I. general theory}, journal = {Journal of Optics}, volume = {18}, number = {6}, year = {2016}, pages = {065401}, keywords = {MF}, doi = {10.1088/2040-8978/18/6/065401}, author = {Radim Filip and P. Zem{\'a}nek} } @article {SamekSENS16, title = {Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16}, journal = {Sensors}, volume = {16}, year = {2016}, pages = {1808}, keywords = {MF}, doi = {10.3390/s16111808}, author = {O. Samek and S. Obru{\v c}a and M {\v S}iler and P. Sedl{\'a}{\v c}ek and Pavla Bene{\v s}ov{\'a} and D. Ku{\v c}era and I. M{\'a}rov{\'a} and J Je{\v z}ek and Silva Bernatov{\'a} and P. Zem{\'a}nek} } @article { SimpsonPRA16, title = {Synchronization of colloidal rotors through angular optical binding}, journal = {Phys. Rev. A}, volume = {93}, year = {2016}, pages = {023842}, keywords = {MF}, doi = {10.1103/PhysRevA.93.023842}, author = {S. H. Simpson and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek} } @article { RyabovPRE16, title = {Thermally-induced passage and current of particles in highly unstable optical potential}, journal = {Phys. Rev.E}, volume = {16}, year = {2016}, pages = {042108}, keywords = {MF}, doi = {10.1103/PhysRevE.94.042108}, author = {Artem Ryabov and P. Zem{\'a}nek and Radim Filip} } @article { ChvatalOR15, title = {Binding of a pair of Au nanoparticles in a wide Gaussian standing wave}, journal = {Opt. Rev.}, volume = {22}, year = {2015}, pages = {157-161}, keywords = {MF}, doi = {10.1007/s10043-015-0027-3}, author = {Luk{\'a}{\v s} Chv{\'a}tal and Oto Brzobohat{\'y} and P. Zem{\'a}nek} } @article { BrzobohatyOE15b, title = {Complex rotational dynamics of multiple spheroidal particles in a circularly polarized, dual beam trap}, journal = {Opt. Express}, volume = {23}, year = {2015}, pages = {7273-7287}, keywords = {MF}, doi = {10.1364/OE.23.007273}, author = {Oto Brzobohat{\'y} and Alejandro V. Arzola and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and P J{\'a}kl and S. H. Simpson and P. Zem{\'a}nek} } @article { KrzyzanekMM15, title = {Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria}, journal = {Microscopy and Microanalysis}, volume = {21}, number = {S3}, year = {2015}, pages = {183-184}, keywords = {MF}, doi = {10.1017/S1431927615001713}, author = {V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and O. Samek and S. Obru{\v c}a and I. M{\'a}rov{\'a} and Silva Bernatov{\'a} and M {\v S}iler and P. Zem{\'a}nek} } @article { SamekJBO15, title = {Identification of individual biofilm-forming bacterial cells using Raman tweezers}, journal = {J. Biomed. Opt.}, volume = {20}, number = {5}, year = {2015}, keywords = {MF}, doi = {10.1117/1.JBO.20.5.051038}, author = {O. Samek and Silva Bernatov{\'a} and J Je{\v z}ek and M {\v S}iler and M. {\v S}er{\'y} and V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and P. Zem{\'a}nek and V. Hol{\'a} and F. R{\r u}{\v z}i{\v c}ka} } @article { MlynarikovaSENS15, title = {Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy}, journal = {Sensors}, volume = {15}, year = {2015}, pages = {29635-29647}, keywords = {MF}, doi = {10.3390/s151129635}, author = {K. Mlynarikov{\'a} and O. Samek and Silva Bernatov{\'a} and F. R{\r u}{\v z}i{\v c}ka and J Je{\v z}ek and A. Haronikov{\'a} and M {\v S}iler and P. Zem{\'a}nek and V. Hol{\'a}} } @article { HrubanovaMM15, title = {Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements}, journal = {Microscopy and Microanalysis}, volume = {21}, year = {2015}, pages = {187-188}, keywords = {MF}, doi = {10.1017/S1431927615001737}, author = {K. Hrubanov{\'a} and Silva Bernatov{\'a} and O. Samek and M. {\v S}er{\'y} and P. Zem{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and F. R{\r u}{\v z}i{\v c}ka and V. Krzy{\v z}{\'a}nek} } @article { BrzobohatyOE15, title = {Non-spherical gold nanoparticles trapped in optical tweezers: shape matters}, journal = {Opt. Express}, volume = {23}, year = {2015}, pages = {8179-8189}, keywords = {MF}, doi = {10.1364/OE.23.008179}, author = {Oto Brzobohat{\'y} and M {\v S}iler and J. Trojek and Luk{\'a}{\v s} Chv{\'a}tal and V{\'\i}t{\v e}zslav Kar{\'a}sek and P. Zem{\'a}nek} } @article { SilerJQSRT15, title = {Optical trapping in secondary maxima of focused laser beam}, journal = {J. Quant. Spectrosc. Radiat. Transf.}, volume = {162}, year = {2015}, pages = {114 - 121}, keywords = {MF}, doi = {10.1016/j.jqsrt.2015.03.003}, author = {M {\v S}iler and P. Zem{\'a}nek} } @article { SamekMM15, title = {SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry}, journal = {Microscopy and Microanalysis}, volume = {21}, year = {2015}, pages = {1775-1776}, keywords = {MF}, doi = {10.1017/S1431927615009654}, author = {O. Samek and A. Haronikov{\'a} and N. Va{\v s}kovicov{\'a} and K. Hrubanov{\'a} and J Je{\v z}ek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek} } @article { BrzobohatySR15, title = {Three-Dimensional Optical Trapping of a Plasmonic Nanoparticle using Low Numerical Aperture Optical Tweezers}, journal = {Sci. Rep.}, volume = {5}, year = {2015}, pages = {8106}, keywords = {MF}, doi = {10.1038/srep08106}, author = {Oto Brzobohat{\'y} and M {\v S}iler and J. Trojek and Luk{\'a}{\v s} Chv{\'a}tal and V{\'\i}t{\v e}zslav Kar{\'a}sek and Ale{\v s} Pat{\'a}k and Zuzana Pokorn{\'a} and Filip Mika and P. Zem{\'a}nek} } @article {PorizkaSENS14, title = {Algal Biomass Analysis by Laser-Based Analytical Techniques{\textemdash}A Review}, journal = {Sensors}, volume = {14}, year = {2014}, pages = {17725-17752}, keywords = {MF}, doi = {10.3390/s140917725}, author = {Po{\v r}{\'\i}zka, P. and P. Proch{\'a}zkov{\'a} and D. Proch{\'a}zka and Sl{\'a}dkov{\'a}, L. and Novotn{\'y}, J. and Petrilak, M. and Brada, M. and O. Samek and Pil{\'a}t, Z. and P. Zem{\'a}nek and Adam, V. and Kizek, R. and Novotn{\'y}, J. and Kaiser, J.} } @article { SamekIJMC14, title = {Candida parapsilosis Biofilm Identification by Raman Spectroscopy}, journal = {Int. J. Mol. Sci.}, volume = {15}, year = {2014}, pages = {23924-23935}, keywords = {MF}, doi = {10.3390/ijms151223924}, author = {O. Samek and K. Mlynarikov{\'a} and Silva Bernatov{\'a} and J Je{\v z}ek and V. Krzy{\v z}{\'a}nek and M {\v S}iler and P. Zem{\'a}nek and F. R{\r u}{\v z}i{\v c}ka and V. Hol{\'a} and M. Mahelov{\'a}} } @article { JaklOE14, title = {Optical sorting of nonspherical and living microobjects in moving interference structures}, journal = {Opt. Express}, volume = {22}, year = {2014}, pages = {29746-29760}, keywords = {MF}, doi = {10.1364/OE.22.029746}, author = {P J{\'a}kl and Alejandro V. Arzola and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and Karen Volke-Sep{\'u}lveda and P. Zem{\'a}nek} } @article { ArzolaOE14, title = {Rotation, oscillation and hydrodynamic synchronization of optically trapped oblate spheroidal microparticles}, journal = {Opt. Express}, volume = {22}, year = {2014}, pages = {16207-16221}, keywords = {MF}, doi = {10.1364/OE.22.016207}, author = {Alejandro V. Arzola and P J{\'a}kl and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek} } @article { BrzobohatyNP13, title = {Experimental demonstration of optical transport, sorting and self-arrangement using a {\textquoteleft}tractor beam{\textquoteright}}, journal = {Nature Photon.}, volume = {7}, number = {2}, year = {2013}, pages = {123-127}, keywords = {MF}, doi = {10.1038/nphoton.2012.332}, author = {Oto Brzobohat{\'y} and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek} } @article { BernatovaMol13, title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy}, journal = {Molecules}, volume = {18}, year = {2013}, pages = {13188-13199}, keywords = {MF}, doi = {10.3390/molecules181113188}, author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka} } @article { TomoriOPJ13, title = {Holographic Raman tweezers controlled by hand gestures and voice commands}, journal = {Optics and Photonics Journal}, volume = {3}, year = {2013}, pages = {331-336}, keywords = {MF}, doi = {10.4236/opj.2013.32B076}, author = {Z. Tomori and M. Antal{\'\i}k and P. Ke{\v s}a and J. Ka{\v n}ka and P J{\'a}kl and M. {\v S}er{\'y} and Silva Bernatov{\'a} and P. Zem{\'a}nek} } @article { SilerJQSRT13, title = {Metallic nanoparticles in a standing wave: optical force and heating}, journal = {J. Quant. Spectrosc. Radiat. Transf.}, volume = {126}, year = {2013}, pages = {84-90}, keywords = {MF}, doi = {10.1016/j.jqsrt.2012.10.005}, author = {M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek} } @article { SilerJQSRT13b, title = {Optical forces in a non-diffracting vortex beam}, journal = {J. Quant. Spectrosc. Radiat. Transf.}, volume = {126}, year = {2013}, pages = {78-83}, keywords = {MF}, doi = {10.1016/j.jqsrt.2012.08.030}, author = {M {\v S}iler and P. Zem{\'a}nek} } @article { BrzobohatyOL13, title = {Optical manipulation of aerosol droplets using a holographic dual and single beam trap}, journal = {Opt. Lett.}, volume = {38}, number = {22}, year = {2013}, pages = {4601-4604}, keywords = {MF}, doi = {10.1364/OL.38.004601}, author = {Oto Brzobohat{\'y} and M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and P. Zem{\'a}nek} } @article { PilatJPPB13, title = {Optical trapping of microalgae at 735{\textendash}1064 nm: Photodamage assessment}, journal = {J. Photochem. Photobiol. B}, volume = {121}, year = {2013}, pages = {27 - 31}, keywords = {MF}, doi = {10.1016/j.jphotobiol.2013.02.006}, author = {Z. Pil{\'a}t and J Je{\v z}ek and M. {\v S}er{\'y} and M. Trt{\'\i}lek and L. Nedbal and P. Zem{\'a}nek} } @article {AasOE13, title = {Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching}, journal = {Opt. Express}, volume = {21}, number = {18}, year = {2013}, pages = {21380-21394}, keywords = {MF}, doi = {10.1364/OE.21.021380}, author = {Mehdi Aas and A. Jon{\'a}{\v s} and Alper Kiraz and Oto Brzobohat{\'y} and J Je{\v z}ek and Z. Pil{\'a}t and P. Zem{\'a}nek} } @article {PorizkaSAB12, title = {Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology}, journal = {Spectrochim. Acta B}, volume = {74-75}, year = {2012}, pages = {169-176}, keywords = {MF}, doi = {10.1016/j.sab.2012.06.014}, author = {P. Po{\v r}{\'\i}zka and D. Proch{\'a}zka and Z. Pil{\'a}t and Kraj{\v c}arov{\'a}, L. and J. Kaiser and Malina, R. and J. Novotn{\'y} and P. Zem{\'a}nek and J Je{\v z}ek and M. {\v S}er{\'y} and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and Dobransk{\'a}, K. and K. Novotn{\'y} and M. Trt{\'\i}lek and O. Samek} } @article { TrojekJOSAA12, title = {Optical alignment and confinement of an ellipsoidal nanorod in optical tweezers: a theoretical study}, journal = {J. Opt. Soc. Am. A}, volume = {29}, number = {7}, year = {2012}, pages = {1224{\textendash}1236}, keywords = {MF}, doi = {10.1364/JOSAA.29.001224}, author = {J. Trojek and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek} } @article { SilerOE12, title = {Optical forces induced behavior of a particle in a non-diffracting vortex beam}, journal = {Opt. Express}, volume = {20}, year = {2012}, pages = {24304-24319}, keywords = {MF}, doi = {10.1364/OE.20.024304}, author = {M {\v S}iler and P J{\'a}kl and Oto Brzobohat{\'y} and P. Zem{\'a}nek} } @article { PilatJAP2012, title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification}, journal = {J. Appl. Phycol.}, volume = {24}, year = {2012}, pages = {541-546}, keywords = {MF}, doi = {10.1007/s10811-011-9754-4}, author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and M. {\v S}er{\'y} and O. Samek and P. Zem{\'a}nek and L. Nedbal and M. Trt{\'\i}lek} } @article { SilerAPL12, title = {Speed enhancement of multi-particle chain in a traveling standing wave}, journal = {Appl. Phys. Lett.}, volume = {100}, year = {2012}, pages = {051103}, keywords = {MF}, doi = {10.1063/1.3680234}, author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek} } @article { SamekLPL11, title = {Characterization of oil-producing microalgae using Raman spectroscopy}, journal = {Laser Phys. Lett.}, volume = {8}, year = {2011}, pages = {701{\textendash}709}, keywords = {MF}, doi = {10.1002/lapl.201110060}, author = {O. Samek and P. Zem{\'a}nek and A. Jon{\'a}{\v s} and Telle, H. H.} } @article { BrzobohatyAPL11, title = {Dynamic size tuning of multidimensional optically bound matter}, journal = {Appl. Phys. Lett.}, volume = {99}, year = {2011}, pages = {101105}, keywords = {MF}, doi = {10.1063/1.3634007}, author = {Oto Brzobohat{\'y} and V{\'\i}t{\v e}zslav Kar{\'a}sek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek} } @article { CizmarLPL11, title = {The holographic optical micro-manipulation system based on counter-propagating beams}, journal = {Laser Phys. Lett.}, volume = {8}, year = {2011}, pages = {50{\textendash}56}, keywords = {MF}, doi = {10.1002/lapl.201010100}, author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and Oto Brzobohat{\'y} and Kishan Dholakia and P. Zem{\'a}nek} } @article { SilerJOPT11, title = {Parametric study of optical forces acting upon nanoparticles in a single, or a standing, evanescent wave}, journal = {J. Opt.}, volume = {13}, year = {2011}, pages = {044016:1{\textendash}9}, keywords = {MF}, doi = {10.1088/2040-8978/13/4/044016}, author = {M {\v S}iler and P. Zem{\'a}nek} } @article { BrzobohatyOE11, title = {Static and dynamic behavior of two optically bound microparticles in a standing wave}, journal = {Opt. Express}, volume = {19}, year = {2011}, pages = {19613{\textendash}19626}, keywords = {MF}, doi = {10.1364/OE.19.019613}, author = {Oto Brzobohat{\'y} and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and J. Trojek and P. Zem{\'a}nek} } @article { BrzobohatyOE10, title = {Experimental and theoretical determination of optical binding forces}, journal = {Opt. Express}, volume = {18}, number = {24}, year = {2010}, pages = {25389{\textendash}25402}, keywords = {MF}, issn = {1094-4087}, doi = {10.1364/OE.18.025389}, author = {Oto Brzobohat{\'y} and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Kishan Dholakia and P. Zem{\'a}nek} } @article { DholakiaRMP10, title = {Gripped by light: Optical binding}, journal = {Rev. Mod. Phys.}, volume = {82}, year = {2010}, pages = {1767{\textendash}1791}, keywords = {MF}, doi = {10.1103/RevModPhys.82.1767}, author = {Kishan Dholakia and P. Zem{\'a}nek} } @article { SilerNJP10, title = {Particle jumps between optical traps in a one-dimensional optical lattice}, journal = {New. J. Phys.}, volume = {12}, year = {2010}, pages = {083001:1{\textendash}20}, keywords = {MF}, doi = {10.1088/1367-2630/12/8/083001}, author = {M {\v S}iler and P. Zem{\'a}nek} } @article { Samek2010, title = {Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo}, journal = {Sensors}, volume = {10}, year = {2010}, pages = {8635{\textendash}8651}, keywords = {MF}, doi = {10.3390/s100908635}, author = {O. Samek and A. Jon{\'a}{\v s} and Z. Pil{\'a}t and P. Zem{\'a}nek and L. Nedbal and T{\v r}{\'\i}ska, J. and Kotas, P. and M. Trt{\'\i}lek} } @article { TrojekOE09, title = {Extreme axial optical force in a standing wave achieved by optimized object shape}, journal = {Opt. Express}, volume = {17}, number = {13}, year = {2009}, pages = {10472{\textendash}10488}, publisher = {OSA}, keywords = {MF}, doi = {10.1364/OE.17.010472}, author = {J. Trojek and V{\'\i}t{\v e}zslav Kar{\'a}sek and P. Zem{\'a}nek} } @article { KarasekJOPA09, title = {Longitudinal optical binding of several spherical particles studied by the coupled dipole method}, journal = {J. Opt. A: Pure Appl. Opt.}, volume = {11}, year = {2009}, pages = {034009}, keywords = {MF}, doi = {10.1088/1464-4258/11/3/034009}, author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and Oto Brzobohat{\'y} and P. Zem{\'a}nek} } @article { BrzobohatyOE08, title = {High quality quasi-Bessel beam generated by round-tip axicon}, journal = {Opt. Express}, volume = {16}, year = {2008}, pages = {12688{\textendash}12700}, keywords = {MF}, doi = {10.1364/OE.16.012688}, author = {Oto Brzobohat{\'y} and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek} } @article { JonasEPH08, title = {Light at work: The use of optical forces for particle manipulation, sorting, and analysis.}, journal = {Electophoresis}, volume = {29}, year = {2008}, pages = {4813{\textendash}4851}, keywords = {MF}, doi = {10.1002/elps.200800484}, author = {A. Jon{\'a}{\v s} and P. Zem{\'a}nek} } @article { KarasekPRL08, title = {Long-range one-dimensional longitudinal optical binding}, journal = {Phys. Rev. Lett.}, volume = {101}, number = {14}, year = {2008}, pages = {143601}, keywords = {MF}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.101.143601}, author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and Oto Brzobohat{\'y} and P. Zem{\'a}nek and V. Garc{\'e}s-Ch{\'a}vez and Kishan Dholakia} } @article { JaklAPL08, title = {Static optical sorting in a laser interference field}, journal = {Appl. Phys. Lett.}, volume = {92}, number = {16}, year = {2008}, pages = {161110:1{\textendash}3}, keywords = {MF}, issn = {0003-6951}, doi = {10.1063/1.2913759}, author = {P J{\'a}kl and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M. {\v S}er{\'y} and P. Zem{\'a}nek} } @article { SilerNJP08, title = {Surface delivery of a single nanoparticle under moving evanescent standing-wave illumination}, journal = {New. J. Phys.}, volume = {10}, year = {2008}, pages = {113010}, keywords = {MF}, issn = {1367-2630}, doi = {10.1088/1367-2630/10/11/113010}, author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and A. Jon{\'a}{\v s} and P. Zem{\'a}nek} } @article { KarasekJOPA07, title = {Analytical description of longitudinal optical binding of two spherical nanoparticles}, journal = {J. Opt. A: Pure Appl. Opt.}, volume = {9}, year = {2007}, pages = {S215{\textendash}S220}, keywords = {MF}, doi = {10.1088/1464-4258/9/8/S14}, author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and P. Zem{\'a}nek} } @article { JaklJOPAA07, title = {Axial optical trap stiffness influenced by retro-reflected beam}, journal = {J. Opt. A: Pure Appl. Opt.}, volume = {9}, number = {8, Sp. Iss. SI}, year = {2007}, pages = {S251{\textendash}S255}, keywords = {MF}, issn = {1464-4258}, doi = {10.1088/1464-4258/9/8/S19}, author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka and P. Zem{\'a}nek} } @article { DholakiaMCB07, title = {Cellular and colloidal separation using optical forces}, journal = {Methods in Cell Biology}, volume = {82}, year = {2007}, pages = {467{\textendash}495}, keywords = {MF}, doi = {10.1016/S0091-679X(06)82017-0}, author = {Kishan Dholakia and MacDonald, M. P. and P. Zem{\'a}nek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r} } @article { SilerOC07, title = {Optical forces acting on a nanoparticle placed into an interference evanescent field}, journal = {Opt. Commun.}, volume = {275}, year = {2007}, pages = {409{\textendash}420}, keywords = {MF}, doi = {10.1016/j.optcom.2007.03.074}, author = {M {\v S}iler and P. Zem{\'a}nek} } @article { CizmarOE07, title = {Optical tracking of spherical micro-objects in spatially periodic interference fields}, journal = {Opt. Express}, volume = {15}, year = {2007}, pages = {2262{\textendash}2272}, keywords = {MF}, doi = {10.1364/OE.15.002262}, author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek} } @article { JaklJOAM07, title = {Opto-fluidic micromanipulation system based on integrated polymer waveguides}, journal = {J. Optoel Adv. Mater.}, volume = {9}, year = {2007}, pages = {2148-2151}, keywords = {MF}, author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and P. Zem{\'a}nek and Ormos, P. and Valkai, S. and Kelemen, L.} } @article { MilneOE07, title = {Transverse particle dynamics in a Bessel beam}, journal = {Opt. Express}, volume = {15}, number = {21}, year = {2007}, pages = {13972{\textendash}13987}, publisher = {OSA}, keywords = {MF}, doi = {10.1364/OE.15.013972}, url = {http://www.opticsexpress.org/abstract.cfm?URI=oe-15-21-13972}, author = {Milne, Graham and Kishan Dholakia and McGloin, David and Karen Volke-Sep{\'u}lveda and P. Zem{\'a}nek} } @article {KarasekAPB06, title = {Analysis of optical binding in one dimension}, journal = {Appl. Phys. B}, volume = {84}, year = {2006}, pages = {149{\textendash}156}, keywords = {MF}, doi = {10.1007/s00340-006-2297-8}, author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and Kishan Dholakia and P. Zem{\'a}nek} } @article {JezekOE06, title = {Formation of long and thin polymer fiber using nondiffracting beam}, journal = {Opt. Express}, volume = {14}, year = {2006}, pages = {8506-8515}, keywords = {MF}, doi = {10.1364/OE.14.008506}, author = {J Je{\v z}ek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V. Ned{\v e}la and P. Zem{\'a}nek} } @article {SilerAPB06, title = {Optical forces generated by evanescent standing waves and their usage for sub-micron particle delivery}, journal = {Appl. Phys. B}, volume = {84}, year = {2006}, pages = {157{\textendash}165}, keywords = {MF}, doi = {10.1007/s00340-006-2235-9}, author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M. {\v S}er{\'y} and P. Zem{\'a}nek} } @article {CizmarAPB06, title = {An optical nanotrap array movable over a milimetre range}, journal = {Appl. Phys. B}, volume = {84}, year = {2006}, pages = {197{\textendash}203}, keywords = {MF}, doi = {10.1007/s00340-006-2221-2}, author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M {\v S}iler and P. Zem{\'a}nek} } @article {CizmarPRB06, title = {Optical sorting and detection of sub-micron objects in a motional standing wave}, journal = {Phys. Rev. B}, volume = {74}, year = {2006}, pages = {035105:1-6}, keywords = {MF}, doi = {10.1103/PhysRevB.74.035105}, author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M {\v S}iler and M. {\v S}er{\'y} and P. Zem{\'a}nek and V. Garc{\'e}s-Ch{\'a}vez and Kishan Dholakia} } @article {CizmarNJP06, title = {Sub-micron particle organization by self-imaging of non-diffracting beams}, journal = {New. J. Phys.}, volume = {8}, year = {2006}, pages = {43}, keywords = {MF}, doi = {10.1088/1367-2630/8/3/043}, author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V. Koll{\'a}rov{\'a} and Zden{\v e}k Bouchal and P. Zem{\'a}nek} } @article {CizmarAPL05, title = {Optical conveyor belt for delivery of submicron objects}, journal = {Appl. Phys. Lett.}, volume = {86}, year = {2005}, pages = {174101-1{\textendash}174101-3}, keywords = {MF}, doi = {10.1063/1.1915543}, author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V. Garc{\'e}s-Ch{\'a}vez and Kishan Dholakia and P. Zem{\'a}nek} } @article {CasaburiOC05, title = {Two-and three-beam interferometric optical tweezers}, journal = {Opt. Commun.}, volume = {251}, year = {2005}, pages = {393{\textendash}404}, keywords = {MF}, doi = {10.1016/j.optcom.2005.03.029}, author = {A. Casaburi and G. Pesce and P. Zem{\'a}nek and A. Sasso} } @article {ZemanekOPTCOMM04, title = {Optical forces acting on Rayleigh particle placed into interference field}, journal = {Opt. Commun.}, volume = {240}, year = {2004}, pages = {401-415}, keywords = {MF}, doi = {10.1016/j.optcom.2004.06.051}, author = {P. Zem{\'a}nek and V{\'\i}t{\v e}zslav Kar{\'a}sek and A. Sasso} } @article {JaklJMO03, title = {Behaviour of an optically trapped probe approaching a dielectric interface}, journal = {J Mod. Optics}, volume = {50}, year = {2003}, pages = {1615-1625}, keywords = {MF}, doi = {10.1080/09500340308235235}, author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and A. Jon{\'a}{\v s} and M. Li{\v s}ka and P. Zem{\'a}nek} } @article {ZemanekOPTCOMM03, title = {Theoretical comparison of optical traps created by standing wave and single beam}, journal = {Opt. Commun.}, volume = {220}, year = {2003}, pages = {401-412}, keywords = {MF}, doi = {10.1016/S0030-4018(03)01409-3}, author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka} } @article {ZemanekJOSAA02, title = {Simplified description of optical forces acting on a nanoparticle in the Gaussian standing wave}, journal = {J. Opt. Soc. Am. A}, volume = {19}, year = {2002}, pages = {1025-1034}, keywords = {MF}, doi = {10.1364/JOSAA.19.001025}, author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and M. Li{\v s}ka} } @article {JonasOL01, title = {Single beam trapping in front of reflective surfaces}, journal = {Opt. Lett.}, volume = {26}, year = {2001}, pages = {1466{\textendash}1468}, keywords = {MF}, doi = {10.1364/OL.26.001466}, author = {A. Jon{\'a}{\v s} and P. Zem{\'a}nek and E. - L. Florin} } @article {ZemanekOL99, title = {Optical trapping of nanoparticles and microparticles using Gaussian standing wave.}, journal = {Opt. Lett.}, volume = {24}, year = {1999}, pages = {1448{\textendash}1450}, keywords = {MF}, doi = {10.1364/OL.24.001448}, author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and L. {\v S}r{\'a}mek and M. Li{\v s}ka} } @article {ZemanekOPTCOMM98a, title = {Atomic dipole trap formed by a blue detuned strong Gaussian standing wave}, journal = {Opt. Commun.}, volume = {146}, year = {1998}, pages = {119{\textendash}123}, keywords = {MF}, doi = {10.1016/S0030-4018(97)00526-9}, author = {P. Zem{\'a}nek and C. J. Foot} } @article {ZemanekOPTCOMM98b, title = {Optical trapping of Rayleigh particles using a Gaussian standing wave}, journal = {Opt. Commun.}, volume = {151}, year = {1998}, pages = {273{\textendash}285}, keywords = {MF}, doi = {10.1016/S0030-4018(98)00093-5}, author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and L. {\v S}r{\'a}mek and M. Li{\v s}ka} }