@article {4197,
	title = {Artificial Intelligence-Powered Raman Spectroscopy through Open Science and FAIR Principles},
	journal = {ACS Nano},
	volume = {19},
	year = {2025},
	note = {<p>Publisher: American Chemical Society</p>},
	pages = {38189{\textendash}38218},
	abstract = {<p>Raman spectroscopy is a fast-growing and increasingly powerful analytical technique applied across diverse disciplines such as materials science, chemistry, biology and medicine. This growth is driven by advances in Raman instrumentation and greatly supported by the flourishing of chemometrics and artificial intelligence (AI). However, the full potential of this technique is often hampered by challenges related to data acquisition, processing, interpretation, and sharing. This review paper addresses how a concerted effort toward digitalization, incorporating principles of Open Science and FAIR data (Findable, Accessible, Interoperable, and Reusable), is essential to develop and implement robust, standardized, and accessible digital workflows. These workflows are key to unlock the full power of Raman spectroscopy in combination with AI. We explore the current landscape of digital tools and open resources in Raman spectroscopy, highlighting both existing solutions as well as critical gaps. Despite these advances, the field remains fragmented, with many initiatives developed in isolation, limiting interoperability and slowing progress. In this regard, we assess the trends in Raman spectroscopy hardware and control software as well as the role of AI in improving data collection, automating data analysis, extracting meaningful insights, and enabling predictive modeling. We review challenges such as data quality and model interpretability that constrain the effectiveness and applicability of AI in Raman spectroscopy. Furthermore, we emphasize the importance of standardized data formats, metadata schemas, and domain-specific ontologies to ensure machine-actionability, database federation and interoperability as well as to facilitate collaborative research. We provide curated lists of existing open hardware, databases and standards relevant to Raman spectroscopy. Finally, we propose a roadmap toward an open and FAIR ecosystem for Raman spectroscopy, emphasizing the need for sustainable infrastructure, collaborative development, and community involvement.</p>},
	issn = {1936-0851},
	doi = {10.1021/acsnano.5c09165},
	url = {https://doi.org/10.1021/acsnano.5c09165}
}
@article {4130,
	title = {Surface-Enhanced Raman Spectroscopy for Adenine Detection in Five Selected Bacterial Strains Under Stress Conditions},
	journal = {SENSORS},
	volume = {25},
	year = {2025},
	month = {JUL 26},
	pages = {4629},
	doi = {10.3390/s25154629}
}
@article {3991,
	title = {MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data},
	journal = {NATURE MICROBIOLOGY},
	volume = {9},
	year = {2024},
	month = {MAY},
	issn = {2058-5276},
	doi = {10.1038/s41564-024-01656-3}
}
@article {3728,
	title = {SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering},
	journal = {Biosensors},
	volume = {13},
	year = {2023},
	pages = {182},
	issn = {2079-6374},
	doi = {10.3390/bios13020182},
	url = {https://www.mdpi.com/2079-6374/13/2/182}
}
@article {3481,
	title = {Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field},
	journal = {ACS Applied Materials \& Interfaces},
	volume = {13},
	year = {2021},
	month = {OCT 21},
	pages = {50657-50667},
	doi = {10.1021/acsami.1c11936}
}
@article {3417,
	title = {Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris},
	journal = {Biosensors},
	volume = {11},
	year = {2021},
	pages = {115},
	issn = {2079-6374},
	doi = {10.3390/bios11040115},
	url = {https://www.mdpi.com/2079-6374/11/4/115}
}
@article { PilatSENS18SERS,
	title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {3212},
	doi = {10.3390/s18103212}
}
@article { PilatSENS18Ecoli,
	title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {1623},
	doi = {10.3390/s18051623}
}
@article { HrubanovaSENS18,
	title = {Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy},
	journal = {Sensors},
	volume = {18},
	number = {12},
	year = {2018},
	pages = {4089},
	doi = {10.3390/s18124089}
}
@article {PilatSENS17,
	title = {Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System},
	journal = {Sensors},
	volume = {17},
	year = {2017},
	pages = {2640},
	doi = {10.3390/s17112640}
}
@article { JonasJOSAB17,
	title = {Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators},
	journal = {J. Opt. Soc. Am. B},
	volume = {34},
	year = {2017},
	pages = {1855-1864},
	doi = {10.1364/JOSAB.34.001855}
}
@article { SilerOL16,
	title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle},
	journal = {Opt. Lett.},
	volume = {41},
	year = {2016},
	pages = {870-873},
	doi = {10.1364/OL.41.000870}
}
@article { BernatovaMol13,
	title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy},
	journal = {Molecules},
	volume = {18},
	year = {2013},
	pages = {13188-13199},
	doi = {10.3390/molecules181113188}
}
@article { PilatJPPB13,
	title = {Optical trapping of microalgae at 735{\textendash}1064 nm: Photodamage assessment},
	journal = {J. Photochem. Photobiol. B},
	volume = {121},
	year = {2013},
	pages = {27 - 31},
	doi = {10.1016/j.jphotobiol.2013.02.006}
}
@article {AasOE13,
	title = {Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching},
	journal = {Opt. Express},
	volume = {21},
	number = {18},
	year = {2013},
	pages = {21380-21394},
	doi = {10.1364/OE.21.021380}
}
@article {PorizkaSAB12,
	title = {Application of laser-induced breakdown spectroscopy to the analysis of	algal biomass for industrial biotechnology},
	journal = {Spectrochim. Acta B},
	volume = {74-75},
	year = {2012},
	pages = {169-176},
	doi = {10.1016/j.sab.2012.06.014}
}
@article { PilatJAP2012,
	title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification},
	journal = {J. Appl. Phycol.},
	volume = {24},
	year = {2012},
	pages = {541-546},
	doi = {10.1007/s10811-011-9754-4}
}
@article { Samek2010,
	title = {Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo},
	journal = {Sensors},
	volume = {10},
	year = {2010},
	pages = {8635{\textendash}8651},
	doi = {10.3390/s100908635}
}
