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Li?ka V, Zem\'e1nkov\'e1 T, Svak V, J\'e1kl P, Je?ek J, Br\'e1neck\'fd M, Simpson SH, Zem\'e1nek P, Brzobohat\'fd O. Cold damping of levitated optically coupled nanoparticles. Optica, 10, 1203?1209 (2023).\par \par Rebro?ov\'e1 K, Bernatov\'e1 S, ?iler M, Ma?ek J, Samek O, Je?ek J, Kizovsk\'fd M, Hol\'e1 V, Zem\'e1nek P, R??i?ka F. Rapid Identification of Pathogens Causing Bloodstream Infections by Raman Spectroscopy and Raman Tweezers. Microbiology Spectrum, 11, e00028-23 (2023).\par \par Rebro?ov\'e1 K, Bernatov\'e1 S, ?iler M, Uhlirova M, Samek O, Je?ek J, Hol\'e1 V, R??i?ka F, Zem\'e1nek P. Raman spectroscopy?a tool for rapid differentiation among microbes causing urinary tract infections. Analytica Chimica Acta, 1191, 339292 (2022).\par \par Svak V, Flaj?manov\'e1 J, Chv\'e1tal L, ?iler M, Jon\'e1? A, Je?ek J, Simpson SH, Zem\'e1nek P, Brzobohat\'fd O. Stochastic dynamics of optically bound matter levitated in vacuum. Optica, 8, 220?229 (2021).\par \par Brzobohat\'fd O, Chv\'e1tal L, Jon\'e1? A, ?iler M, Ka?ka J, Je?ek J, Zem\'e1nek P. Tunable Soft-Matter Optofluidic Waveguides Assembled by Light. ACS Phot., 6, 403-410 (2019).\par \par Pil\'e1t Z, Kizovsk\'fd M, Je?ek J, Kr\'e1tk\'fd S, Sobota J, ?iler M, Samek O, Bury?ka T, Va?\'e1?ek P, Damborsk\'fd J, Prokop Z, Zem\'e1nek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).\par \par Damkov\'e1 J, Chv\'e1tal L, Je?ek J, Oulehla J, Brzobohat\'fd O, Zem\'e1nek P. Enhancement of the `tractor-beam' pulling force on an optically bound structure. Light: Sci. Appl., 7, 17135 (2018).\par \par Pil\'e1t Z, Bernatov\'e1 S, Je?ek J, Kirchhoff J, Tannert A, Neugebauer U, Samek O, Zem\'e1nek P. Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress. Sensors, 18, 1623 (2018).\par \par Rebro?ov\'e1 K, ?iler M, Samek O, R??i?ka F, Bernatov\'e1 S, Je?ek J, Zem\'e1nek P, Hol\'e1 V. Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology, 12, 10 (2017).\par \par Pil\'e1t Z, Jon\'e1? A, Je?ek J, Zem\'e1nek P. Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System. Sensors, 17, 2640 (2017).\par \par Hrubanov\'e1 K, Krzy?\'e1nek V, Samek O, Skoup\'fd R, ?iler M, Je?ek J, Obru?a S, Zem\'e1nek P. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 23, S1 (2017).\par \par Rebro?ov\'e1 K, ?iler M, Samek O, R??i?ka F, Bernatov\'e1 S, Hol\'e1 V, Je?ek J, Zem\'e1nek P, Sokolov\'e1 J, Petr\'e1? P. Rapid identification of staphylococci by Raman spectroscopy. Sci. Rep., 7, 14846 (2017).\par \par Jon\'e1? A, Pil\'e1t Z, Je?ek J, Bernatov\'e1 S, Fo?t T, Zem\'e1nek P, Aas M, Kiraz A. Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators. J. Opt. Soc. Am. B, 34, 1855-1864 (2017).\par \par ?iler M, Je?ek J, J\'e1kl P, Pil\'e1t Z, Zem\'e1nek P. Direct measurement of the temperature profile close to an optically trapped absorbing particle. Opt. Lett., 41, 870-873 (2016).\par \par Samek O, Obru?a S, ?iler M, Sedl\'e1?ek P, Bene?ov\'e1 P, Ku?era D, M\'e1rov\'e1 I, Je?ek J, Bernatov\'e1 S, Zem\'e1nek P. Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16. Sensors, 16, 1808 (2016).\par \par Samek O, Bernatov\'e1 S, Je?ek J, ?iler M, ?er\'fd M, Krzy?\'e1nek V, Hrubanov\'e1 K, Zem\'e1nek P, Hol\'e1 V, R??i?ka F. Identification of individual biofilm-forming bacterial cells using Raman tweezers. J. Biomed. Opt., 20, (2015).\par \par Mlynarikov\'e1 K, Samek O, Bernatov\'e1 S, R??i?ka F, Je?ek J, Haronikov\'e1 A, ?iler M, Zem\'e1nek P, Hol\'e1 V. Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy. Sensors, 15, 29635-29647 (2015).\par \par Samek O, Haronikov\'e1 A, Va?kovicov\'e1 N, Hrubanov\'e1 K, Je?ek J, M\'e1rov\'e1 I, Krzy?\'e1nek V, Zem\'e1nek P. SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry. Microscopy and Microanalysis, 21, 1775-1776 (2015).\par \par Samek O, Mlynarikov\'e1 K, Bernatov\'e1 S, Je?ek J, Krzy?\'e1nek V, ?iler M, Zem\'e1nek P, R??i?ka F, Hol\'e1 V, Mahelov\'e1 M. Candida parapsilosis Biofilm Identification by RamanSpectroscopy. Int. J. Mol. Sci., 15, 23924-23935 (2014).\par \par Bernatov\'e1 S, Samek O, Pil\'e1t Z, ?er\'fd M, Je?ek J, J\'e1kl P, ?iler M, Krzy?\'e1nek V, Zem\'e1nek P, Hol\'e1 V, Dvo?\'e1?kov\'e1 M, R??i?ka F. Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).\par \par Brzobohat\'fd O, ?iler M, Je?ek J, J\'e1kl P, Zem\'e1nek P. Optical manipulation of aerosol droplets using aholographic dual and single beam trap. Opt. Lett., 38, 4601-4604 (2013).\par \par Pil\'e1t Z, Je?ek J, ?er\'fd M, Trt\'edlek M, Nedbal L, Zem\'e1nek P. Optical trapping of microalgae at 735?1064 nm: Photodamage assessment. J. Photochem. Photobiol. B, 121, 27 - 31 (2013).\par \par Aas M, Jon\'e1? A, Kiraz A, Brzobohat\'fd O, Je?ek J, Pil\'e1t Z, Zem\'e1nek P. Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching. Opt. Express, 21, 21380-21394 (2013).\par \par Po?\'edzka P, Proch\'e1zka D, Pil\'e1t Z, Kraj?arov\'e1 L, Kaiser J, Malina R, Novotn\'fd J, Zem\'e1nek P, Je?ek J, ?er\'fd M, Bernatov\'e1 S, Krzy?\'e1nek V, Dobransk\'e1 K, Novotn\'fd K, Trt\'edlek M, Samek O. Application of laser-induced breakdown spectroscopy to the analysis ofalgal biomass for industrial biotechnology. Spectrochim. Acta B, 74-75, 169-176 (2012).\par \par Pil\'e1t Z, Bernatov\'e1 S, Je?ek J, ?er\'fd M, Samek O, Zem\'e1nek P, Nedbal L, Trt\'edlek M. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. J. Appl. Phycol., 24, 541-546 (2012).\par \par J\'e1kl P, ?er\'fd M, Je?ek J, Li?ka M, Zem\'e1nek P. Axial optical trap stiffness influenced by retro-reflected beam. J. Opt. A: Pure Appl. Opt., 9, S251?S255 (2007).\par \par J\'e1kl P, ?er\'fd M, Je?ek J, Zem\'e1nek P, Ormos P, Valkai S, Kelemen L. Opto-fluidic micromanipulation system based on integrated polymer waveguides. J. Optoel Adv. Mater., 9, 2148-2151 (2007).\par \par Je?ek J, ?i?m\'e1r T, Ned?la V, Zem\'e1nek P. Formation of long and thin polymer fiber using nondiffracting beam. Opt. Express, 14, 8506-8515 (2006).\par \par J\'e1kl P, ?er\'fd M, Je?ek J, Jon\'e1? A, Li?ka M, Zem\'e1nek P. Behaviour of an optically trapped probe approaching a dielectric interface. J Mod. Optics, 50, 1615-1625 (2003).\par \par Zem\'e1nek P, Jon\'e1? A, J\'e1kl P, ?er\'fd M, Je?ek J, Li?ka M. Theoretical comparison of optical traps created by standing wave and single beam. Opt. Commun., 220, 401-412 (2003).\par \par }