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Ruiz-Arce DD, Bene?ov\'e1 M, Protiva V, Ko?i?ek J, Pil\'e1t Z, Je?ek J, Silhan L, Zem\'e1nek P, Jonas A, Sala L. Optomechanical Probes with Tailored Material and Shape Asymmetry Assembled Using DNA Origami. Nano Letters, 26, 2080?2088 (2026).\par \par Coca-Lopez N, Alcolea-Rodriguez V, Ba\'f1ares MA, Brockhauser S, Gorenflot J, Henderson A, Hildebrandt R, Jeliazkova N, Kochev N, Diz ELozano, Pil\'e1t Z, Polli D, Str\'f6mert P, Sturm C, Vanna R, Portela R. Artificial Intelligence-Powered Raman Spectroscopy through Open Science and FAIR Principles. ACS Nano, 19, 38189?38218 (2025).\par \par Ghazalova M, Modlitbova P, Samek O, Rebro?ov\'e1 K, ?iler M, Je?ek J, Pil\'e1t Z. Surface-Enhanced Raman Spectroscopy for Adenine Detection in Five Selected Bacterial Strains Under Stress Conditions. SENSORS, 25, 4629 (2025).\par \par Lee KSoo, Landry Z, Athar A, Alcolombri U, Ayutthaya PPramoj Na, Berry D, de Bettignies P, Cheng J-X, Csucs G, Cui L, Deckert V, Dieing T, Dionne J, Doskocil O, D'Souza G, Garcia-Timermans C, Gierlinger N, Goda K, Hatzenpichler R, Henshaw RJ, Huang WE, Iermak I, Ivleva NP, Kneipp J, Kubryk P, Kuesel K, Lee TKwon, Lee SSik, Ma B, Martinez-Perez C, Matousek P, Meckenstock RU, Min W, Mojzes P, Mueller O, Kumar N, Nielsen PHalkjaer, Notingher I, Palatinszky M, Pereira FC, Pezzotti G, Pil\'e1t Z, Plesinger F, Popp J, Probst AJ, Riva A, Saleh AAE, Samek O, Sapers HM, Schubert OT, Stubbusch AKM, Tadesse LF, Taylor GT, Wagner M, Wang J, Yin H, Yue Y, Zenobi R, Zini J, Sarkans U, Stocker R. MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. NATURE MICROBIOLOGY, 9, (2024).\par \par Bene?ov\'e1 M, Bernatov\'e1 S, Mika F, Pokorn\'e1 Z, Je?ek J, ?iler M, Samek O, R??i?ka F, Rebro?ov\'e1 K, Zem\'e1nek P, Pil\'e1t Z. SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering. Biosensors, 13, 182 (2023).\par \par Jonas A, Pil\'e1t Z, Je?ek J, Bernatov\'e1 S, Jedli?ka P, Aas M, Kiraz A, Zem\'e1nek P. Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field. ACS Applied Materials & Interfaces, 13, 50657?50667 (2021).\par \par Kizovsk\'fd M, Pil\'e1t Z, Mylenko M, Hrouzek P, Kuta J, Skoup\'fd R, Krzy?\'e1nek V, Hrubanov\'e1 K, Adamczyk O, Je?ek J, Bernatov\'e1 S, Klementov\'e1 T, Gjevik A, ?iler M, Samek O, Zem\'e1nek P. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors, 11, 115 (2021).\par \par Pil\'e1t Z, Kizovsk\'fd M, Je?ek J, Kr\'e1tk\'fd S, Sobota J, ?iler M, Samek O, Bury?ka T, Va?\'e1?ek P, Damborsk\'fd J, Prokop Z, Zem\'e1nek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).\par \par Pil\'e1t Z, Bernatov\'e1 S, Je?ek J, Kirchhoff J, Tannert A, Neugebauer U, Samek O, Zem\'e1nek P. Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress. Sensors, 18, 1623 (2018).\par \par Hrubanov\'e1 K, Krzy?\'e1nek V, Nebes\'e1?ov\'e1 J, R??i?ka F, Pil\'e1t Z, Samek O. Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy. Sensors, 18, 4089 (2018).\par \par Pil\'e1t Z, Jon\'e1? A, Je?ek J, Zem\'e1nek P. Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System. Sensors, 17, 2640 (2017).\par \par Jon\'e1? A, Pil\'e1t Z, Je?ek J, Bernatov\'e1 S, Fo?t T, Zem\'e1nek P, Aas M, Kiraz A. Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators. J. Opt. Soc. Am. B, 34, 1855-1864 (2017).\par \par ?iler M, Je?ek J, J\'e1kl P, Pil\'e1t Z, Zem\'e1nek P. Direct measurement of the temperature profile close to an optically trapped absorbing particle. Opt. Lett., 41, 870-873 (2016).\par \par Bernatov\'e1 S, Samek O, Pil\'e1t Z, ?er\'fd M, Je?ek J, J\'e1kl P, ?iler M, Krzy?\'e1nek V, Zem\'e1nek P, Hol\'e1 V, Dvo?\'e1?kov\'e1 M, R??i?ka F. Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).\par \par Pil\'e1t Z, Je?ek J, ?er\'fd M, Trt\'edlek M, Nedbal L, Zem\'e1nek P. Optical trapping of microalgae at 735?1064 nm: Photodamage assessment. J. Photochem. Photobiol. B, 121, 27 - 31 (2013).\par \par Aas M, Jon\'e1? A, Kiraz A, Brzobohat\'fd O, Je?ek J, Pil\'e1t Z, Zem\'e1nek P. Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching. Opt. Express, 21, 21380-21394 (2013).\par \par Po?\'edzka P, Proch\'e1zka D, Pil\'e1t Z, Kraj?arov\'e1 L, Kaiser J, Malina R, Novotn\'fd J, Zem\'e1nek P, Je?ek J, ?er\'fd M, Bernatov\'e1 S, Krzy?\'e1nek V, Dobransk\'e1 K, Novotn\'fd K, Trt\'edlek M, Samek O. Application of laser-induced breakdown spectroscopy to the analysis ofalgal biomass for industrial biotechnology. Spectrochim. Acta B, 74-75, 169-176 (2012).\par \par Pil\'e1t Z, Bernatov\'e1 S, Je?ek J, ?er\'fd M, Samek O, Zem\'e1nek P, Nedbal L, Trt\'edlek M. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. J. Appl. Phycol., 24, 541-546 (2012).\par \par Samek O, Jon\'e1? A, Pil\'e1t Z, Zem\'e1nek P, Nedbal L, T?\'edska J, Kotas P, Trt\'edlek M. Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo. Sensors, 10, 8635?8651 (2010).\par \par }