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Khyrova M, Sepitka J, Cerny V, Lukes J, Slaninova E, Plichta T. Micro-compression analysis of biopolymer-producing bacteria using Cupriavidus necator as the model bacterium. The Cell Surface, 15, 100171 (2026).\par \par Ruiz-Arce DD, Bene?ov\'e1 M, Protiva V, Ko?i?ek J, Pil\'e1t Z, Je?ek J, Silhan L, Zem\'e1nek P, Jonas A, Sala L. Optomechanical Probes with Tailored Material and Shape Asymmetry Assembled Using DNA Origami. Nano Letters, 26, 2080?2088 (2026).\par \par Br\'e1neck\'fd M, Jiricek P, Houdkova J, Olivova L, Aboualigaledari N, Plichta T, Cech V. Oxidation resistance of organosilicon layered nanostructures synthesized by nonthermal plasma and plasma silica as a source of oxidizing agent. Applied Surface Science, 164972 (2026).\par \par Coca-Lopez N, Alcolea-Rodriguez V, Ba\'f1ares MA, Brockhauser S, Gorenflot J, Henderson A, Hildebrandt R, Jeliazkova N, Kochev N, Diz ELozano, Pil\'e1t Z, Polli D, Str\'f6mert P, Sturm C, Vanna R, Portela R. Artificial Intelligence-Powered Raman Spectroscopy through Open Science and FAIR Principles. ACS Nano, 19, 38189?38218 (2025).\par \par Laznicka T, Kizovsk\'fd M, Hrubanov\'e1 K, Je?ek J, Mrazova K, Obru?a S, Samek O, Krzy?\'e1nek V. Assembly for semi-correlation analysis of samples using cryogenic scanning electron microscopy and cryogenic Raman micro-spectroscopy. MEASUREMENT SCIENCE AND TECHNOLOGY, 36, 055903 (2025).\par \par Po?\'edzka P, Holub D, Kizovsk\'fd M, Samek O, Kaiser J, Kal?\'edkov\'e1 G. Chapter 26 - Hyphenated Raman and laser spectroscopy for the characterization of microplastics in tissues. Applied Raman Spectroscopy. (Singh VKumared.), Elsevier, s.441-451 (2025).\par \par Adhvaryu S, Kiskova J, Piknova M, Malinicova L, Beck T, Buchtikova I, Kourilova X, Kizovsk\'fd M, Samek O, Obru?a S, Pristas P. The characterization of halophilic polyhydroxyalkanoate-producing bacteria from brine in Solivar near Pre?ov (Slovakia). World Journal of Microbiology and Biotechnology, 41, 505 (2025).\par \par Silhan L, Arregi JAnder, Plichta T, Vaculik O, Novotny J, ?er\'fd M. Compact vacuum setup for laser induced plasma etching with optical emission spectrum monitoring. Journal of Vacuum Science & Technology B, 43, 034202 (2025).\par \par Brzobohat\'fd O, Chv\'e1tal L, Jon\'e1? A, Zem\'e1nek P. Dynamic formation of arrays of interacting optical spatial solitons under light-sheet illumination. Optics Letters, 50, 4318?4321 (2025).\par \par Richterov\'e1 V, Gjevik A, Vaculik O, Vejrosta J, Peka? M. Impact of Collagen on the Rheological and Transport Properties of Agarose Hydrogels. Gels, 11, 396 (2025).\par \par Plichta T, Mrazova K, Richterova V, Khyrova M, Lukes J, Sepitka J. Multiscale analysis of mechanical and structural properties of agarose?silk fibroin hydrogels. International Journal of Biological Macromolecules, 330, 148133 (2025).\par \par Ducha? M, ?iler M, J\'e1kl P, Brzobohat\'fd O, Rakhubovsky A, Filip R, Zem\'e1nek P. Nanomechanical state amplifier based on optical inverted pendulum. Communications Physics, 8, 276 (2025).\par \par Vejrosta J, Cabalov\'e1 S, Plichta T, ?er\'fd M, Ma?ka T, Samek O, Zem\'e1nek P. Preparation and pilot experiments on microfluidic chip with surface acoustic waves, 23rd Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics, (Pudi? D, Jandura D, Lettrichov\'e1 Ied.), 2025, International Society for Optics and Photonics.\par \par Heinke R, ?ilhan L, Ehrhardt M, Lorenz P, Zajadacz J, Bauer J, Arnold T, ?er\'fd M, Zimmer K. Stability of masking materials for pattern transfer of lithographic masks into fused silica by atmospheric pressure plasma jet etching. Micro and Nano Engineering, 28, 100309 (2025).\par \par Ghazalova M, Modlitbova P, Samek O, Rebro?ov\'e1 K, ?iler M, Je?ek J, Pil\'e1t Z. Surface-Enhanced Raman Spectroscopy for Adenine Detection in Five Selected Bacterial Strains Under Stress Conditions. SENSORS, 25, 4629 (2025).\par \par Jones P, Bernatov\'e1 S, Kotsifaki DG. Biomedical Optics Express Feature Issue Introduction: Optical Manipulation and Its Applications (OMA) 2023. BIOMEDICAL OPTICS EXPRESS, 15, 1192-1194 (2024).\par \par Silhan L, Novotny J, Plichta T, Je?ek J, Vaculik O, ?er\'fd M. Design of Setup for Laser Induced Plasma Etching, 2024 37th International Vacuum Nanoelectronics Conference (IVNC), 2024.\par \par Uhlirova H, Cizmar T, Pakan JMP, Gomes A. Exploiting Complex Media Photonics to Illuminate Brain's Hidden Depth. NEUROPHOTONICS, 11, S11501 (2024).\par \par Plichta T, ?ech V. Functional Interlayers Developed to Control Interfacial Adhesion in Polymer Composites Reinforced with Glass and Basalt Fibers. Progress in Adhesion and Adhesives. Vol. 8.  (Mittal KLed.) Kap. 3, Wiley, s.119?188 (2024).\par \par Mich\'e1lkov\'e1 I, Colombel S, Gomes AD, Cizmar T. Generating Airy beams through multimode fibres. Optics Express, 32, 6838?6847 (2024).\par \par Lee KSoo, Landry Z, Athar A, Alcolombri U, Ayutthaya PPramoj Na, Berry D, de Bettignies P, Cheng J-X, Csucs G, Cui L, Deckert V, Dieing T, Dionne J, Doskocil O, D'Souza G, Garcia-Timermans C, Gierlinger N, Goda K, Hatzenpichler R, Henshaw RJ, Huang WE, Iermak I, Ivleva NP, Kneipp J, Kubryk P, Kuesel K, Lee TKwon, Lee SSik, Ma B, Martinez-Perez C, Matousek P, Meckenstock RU, Min W, Mojzes P, Mueller O, Kumar N, Nielsen PHalkjaer, Notingher I, Palatinszky M, Pereira FC, Pezzotti G, Pil\'e1t Z, Plesinger F, Popp J, Probst AJ, Riva A, Saleh AAE, Samek O, Sapers HM, Schubert OT, Stubbusch AKM, Tadesse LF, Taylor GT, Wagner M, Wang J, Yin H, Yue Y, Zenobi R, Zini J, Sarkans U, Stocker R. MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. NATURE MICROBIOLOGY, 9, (2024).\par \par Khan A, Qadeer A, Wajid A, Ullah Q, Rahman SUr, Ullah K, Safi SZaman, Ticha L, Skalickova S, Chilala P, Bernatov\'e1 S, Samek O, Horky P. Microplastics in animal nutrition: Occurrence, spread, and hazard in animals. JOURNAL OF AGRICULTURE AND FOOD RESEARCH, 17, 101258 (2024).\par \par Li?ka V, Zem\'e1nkov\'e1 T, J\'e1kl P, ?iler M, Simpson SH, Zem\'e1nek P, Brzobohat\'fd O. PT-like phase transition and limit cycle oscillations in non-reciprocally coupled optomechanical oscillators levitated in vacuum. Nat. Phys., 1?7 (2024).\par \par Parobkov\'e1 V, Holub D, Kizovsk\'fd M, Kal?\'edkov\'e1 G, Rozman U, Ur\'edk M, Novotn\'fd K, Samek O, Zikmund T, Po?\'edzka P, Kaiser J. Raman microspectroscopy and laser-induced breakdown spectroscopy for the analysis of polyethylene microplastics in human soft tissues. Heliyon, 10, e37844 (2024).\par \par Ma?ka T, ?iler M, Li?ka V, Zem\'e1nek P, ?er\'fd M, Brzobohat\'fd O. Simulation of optomechanical interaction of levitated nanoparticle with photonic crystal micro cavity. Opt. Express, 32, 7185?7196 (2024).\par \par Uhlirova H, Stib?rek M, Pik\'e1lek T, Gomes A, Turtaev S, Kolbabkova P, Cizmar T. ``There's plenty of room at the bottom'': deep brain imaging with holographic endo-microscopy. NEUROPHOTONICS, 11, (2024).\par \par Naz S, Chatha AManan Must, Khan NAhmed, Ullah Q, Zaman F, Qadeer A, Khan IMuhammad, Danabas D, Kiran A, Skalickova S, Bernatov\'e1 S, Khan MZahoor, Horky P. Unraveling the ecotoxicological effects of micro and nano-plastics on aquatic organisms and human health. Frontiers in Environmental Science, 12, (2024).\par \par Stib?rek M, Ondr\'e1?kov\'e1 P, Tuckova T, Turtaev S, ?iler M, Pik\'e1lek T, J\'e1kl P, Gomes A, Krejci J, Kolbabkova P, Uhlirova H, Cizmar T. 110 mu m thin endo-microscope for deep-brain in vivo observations of neuronal connectivity, activity and blood flow dynamics. NATURE COMMUNICATIONS, 14, 1897 (2023).\par \par Mouralova K, Benes L, Prokes T, Zahradnicek R, Fries J, Plichta T. Analysis of the machinability of different types of sintered carbides with WEDM in both water and oil baths. The International Journal of Advanced Manufacturing Technology, (2023).\par \par Ozbakir Y, Jonas A, Kiraz A, Erkey C. Application of Aerogels in Optical Devices. Springer Handbook of Aerogels. (Aegerter MA, Leventis N, Koebel M, III SASteinered.), Springer International Publishing, Cham, s.1431?1454 (2023).\par \par Koch SMarie, Freidank-Pohl C, Siontas O, Cortesao M, Mota A, Runzheimer K, Jung S, Rebro?ov\'e1 K, ?iler M, Moeller R, Meyer V. Aspergillus niger as a cell factory for the production of pyomelanin, a molecule with UV-C radiation shielding activity. Frontiers in Microbiology, 14, (2023).\par \par ?iler M, Svak V, Jon\'e1? A, Simpson SH, Brzobohat\'fd O, Zem\'e1nek P. Bayesian Estimation of Experimental Parameters in Stochastic Inertial Systems: Theory, Simulations, and Experiments with Objects Levitated in Vacuum. Phys. Rev. Appl., 19, 064059 (2023).\par \par Li?ka V, Zem\'e1nkov\'e1 T, Svak V, J\'e1kl P, Je?ek J, Br\'e1neck\'fd M, Simpson SH, Zem\'e1nek P, Brzobohat\'fd O. Cold damping of levitated optically coupled nanoparticles. Optica, 10, 1203?1209 (2023).\par \par Cao H, ?i?m\'e1r T, Turtaev S, Tyc T, Rotter S. Controlling light propagation in multimode fibers for imaging, spectroscopy, and beyond. Adv. Opt. Photon., 15, 524?612 (2023).\par \par Arita Y, Simpson SH, Bruce GD, Wright EM, Zem\'e1nek P, Dholakia K. Cooling the optical-spin driven limit cycle oscillations of a levitated gyroscope. Commun. Phys., 6, 238 (2023).\par \par Brodsk\'fd J, Gablech I, Migliaccio L, Havl\'ed?ek M, Donahue MJ, G?owacki ED. Downsizing the Channel Length of Vertical Organic Electrochemical Transistors. ACS Applied Materials & Interfaces, 15, 27002-27009 (2023).\par \par Brodsk\'fd J, Gablech I, Migliaccio L, Havli'cek M, Donahue MJJ, Glowacki EDD. Downsizing the Channel Length of Vertical Organic Electrochemical Transistors. ACS APPLIED MATERIALS & INTERFACES, 15, 27002-27009 (2023).\par \par Siems K, Runzheimer K, Rebro?ov\'e1 K, Etzbach L, Auerhammer A, Rehm A, Schwengers O, ?iler M, Samek O, R??i?ka F, Moeller R. Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis. Frontiers in Microbiology, 14, (2023).\par \par Pr?cha L, Lejeune M, Kizovsk\'fd M, Materna-Mikmekov\'e1 E. In-situ thermal Raman spectroscopy of single-layer graphene on different substrates. Materials Today Communications, 35, 105921 (2023).\par \par Po?\'edzka P, Brunnbauer L, Porkert M, Rozman U, Marolt G, Holub D, Kizovsk\'fd M, Bene?ov\'e1 M, Samek O, Limbeck A, Kaiser J, Kal?\'edkov\'e1 G. Laser-based techniques: Novel tools for the identification and characterization of aged microplastics with developed biofilm. Chemosphere, 313, 137373 (2023).\par \par Tarbajova V, Kolackova M, Chaloupsky P, Dobesova M, Capal P, Pilat Z, Samek O, Zem\'e1nek P, Svec P, Sterbova DSkopalova, Vaculovicova M, Richtera L, P\'e9rez-de-Mora A, Adam V, Huska D. Physiological and transcriptome profiling of Chlorella sorokiniana: A study on azo dye wastewater decolorization. Journal of Hazardous Materials, 460, 132450 (2023).\par \par Rebro?ov\'e1 K, Bernatov\'e1 S, ?iler M, Ma?ek J, Samek O, Je?ek J, Kizovsk\'fd M, Hol\'e1 V, Zem\'e1nek P, R??i?ka F. Rapid Identification of Pathogens Causing Bloodstream Infections by Raman Spectroscopy and Raman Tweezers. Microbiology Spectrum, 11, e00028-23 (2023).\par \par Vacul\'edk O, Bernatov\'e1 S, Rebro?ov\'e1 K, Samek O, ?ilhan L, ?i?ka FR?, ?er\'fd M, ?iler M, ek JJe?, Zem\'e1nek P. Rapid identification of pathogens in blood serum via Raman tweezers in combination with advanced processing methods. Biomed. Opt. Express, 14, 6410?6421 (2023).\par \par Volpe G, Marag\'f2 OM, Rubinsztein-Dunlop H, Pesce G, Stilgoe AB, Volpe G, Tkachenko G, Truong VGiang, Chormaic SNic, Kalantarifard F, Elahi P, K\'e4ll M, Callegari A, Marqu\'e9s MI, Neves AAR, Moreira WL, Fontes A, Cesar CL, Saija R, Saidi A, Beck P, Eismann JS, Banzer P, Fernandes TFD, Pedaci F, Bowen WP, Vaippully R, Lokesh M, Roy B, Thalhammer-Thurner G, Ritsch-Marte M, Garc\'eda LP\'e9rez, Arzola AV, Castillo IP\'e9rez, Argun A, Muenker TM, Vos BE, Betz T, Cristiani I, Minzioni P, Reece PJ, Wang F, McGloin D, Ndukaife JC, Quidant R, Roberts RP, Laplane C, Volz T, Gordon R, Hanstorp D, Marmolejo JTello, Bruce GD, Dholakia K, Li T, Brzobohat\'fd O, Simpson SH, Zem\'e1nek P, Ritort F, Roichman Y, Bobkova V, Wittkowski R, Denz C, Kumar GVPavan, Foti A, Donato MGrazia, Gucciardi PG, Gardini L, Bianchi G, Kashchuk AV, Capitanio M, Paterson L, Jones PH, Berg-S\'f8rensen K, Barooji YF, Oddershede LB, Pouladian P, Preece D, Adiels CBeck, De Luca AChiara, Magazz\'f9 A, Ciriza DBronte, Iat\'ec MAntonia, Swartzlander GA. Roadmap for optical tweezers. Journal of Physics: Photonics, 5, 022501 (2023).\par \par Bene?ov\'e1 M, Bernatov\'e1 S, Mika F, Pokorn\'e1 Z, Je?ek J, ?iler M, Samek O, R??i?ka F, Rebro?ov\'e1 K, Zem\'e1nek P, Pil\'e1t Z. SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering. Biosensors, 13, 182 (2023).\par \par Plichta T, Sulc V, Ohlidal M, Cech V. Stable a-CSi:H films with a wide range of modulus of elasticity and low internal stress. Surface and Coatings Technology, 459, 129147 (2023).\par \par Brzobohat\'fd O, Ducha? M, J\'e1kl P, Je?ek J, ?iler M, Zem\'e1nek P, Simpson SH. Synchronization of spin-driven limit cycle oscillators optically levitated in vacuum. Nature Communications, 14, 5441 (2023).\par \par ?ech V, Branecky M. Synthesis of thin-film materials using nonthermal plasma at a higher degree of dissociation. Plasma Processes and Polymers, 20, 2300019 (2023).\par \par Hrabina J, Hosek M, Rerucha S, Cizek M, Pilat Z, Zucco M, Lazar J, Cip O. Absolute frequencies of H13C14N hydrogen cyanide transitions in the 1.5-\'b5m region with the saturated spectroscopy and a sub-kHz scanning laser. Opt. Lett., 47, 5704?5707 (2022).\par \par Arita Y, Bruce GD, Wright EM, Simpson SH, Zem\'e1nek P, Dholakia K. All-optical sub-Kelvin sympathetic cooling of a levitated microsphere in vacuum. Optica, 9, 1000?1002 (2022).\par \par Violi IL, Martinez LP, Barella M, Zaza C, Chv\'e1tal L, Zem\'e1nek P, Gutierrez MV, Paredes MY, Scarpettini AF, Olmos-Trigo J, Pais VR, Noblega IDiaz, Cort\'e8s E, Saenz JJose, Bragas AV, Gargiulo J, Stefani FD. Challenges on optical printing of colloidal nanoparticles. J. Chem. Phys., 156, 034201 (2022).\par \par J\'e1kl P, ?iler M, Je?ek J, Cifuentes A, Tr\'e4g\'e5rdh J, Zem\'e1nek P, Cizmar T. Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References. Photonics, 9, 37 (2022).\par \par Mouralova K, Michna S, Zahradnicek R, Bednar J, Plichta T, Fries J. Experimental analysis of microhardness changes of subsurface areas affected by WEDM. Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering, 236, 1979-1991 (2022).\par \par Meixner K, Daffert C, Dalnodar D, Mrazova K, Hrubanov\'e1 K, Krzyzanek V, Nebes\'e1?ov\'e1 J, Samek O, Sedrlova Z, Slaninov\'e1 E, Sedl\'e1?ek P, Obru?a S, Fritz I. Glycogen, poly(3-hydroxybutyrate) and pigment accumulation in three Synechocystis strains when exposed to a stepwise increasing salt stress. JOURNAL OF APPLIED PHYCOLOGY, 34, 1227-1241 (2022).\par \par B?tait? UG, Kupianskyi H, Cizmar T, Phillips DB. How to Build the ``Optical Inverse'' of a Multimode Fibre. Intelligent Computing, 2022, 9816026 (2022).\par \par Du Y, Turtaev S, Leite IT, Lorenz A, Kobelke J, Wondraczek K, ?i?m\'e1r T. Hybrid multimode - multicore fibre based holographic endoscope for deep-tissue neurophotonics. Light: Advanced Manufacturing, 3, 1 (2022).\par \par Karalko A, Kesa P, Jelinek F, Sefc L, Je?ek J, Zem\'e1nek P, Grus T. In Vivo Contrast Imaging of Rat Heart with Carbon Dioxide Foam. SENSORS, 22, 5124 (2022).\par \par Cifuentes A, Tr\'e4g\'e5rdh J. A method for single particle tracking through a multimode fiber. Opt. Express, 30, 36055?36064 (2022).\par \par Gomes AD, Turtaev S, Du Y, ?i?m\'e1r T. Near perfect focusing through multimode fibres. Opt. Express, 30, 10645?10663 (2022).\par \par Abdelfattah A, Ahuja S, Akkin T, Allu SRao, Boas DA, Brake J, Buckley EM, Campbell RE, Chen AI, Cheng X, ?i?m\'e1r T, Costantini I, De Vittorio M, Devor A, Doran PR, Khatib MEl, Emiliani V, Fomin-Thunemann N, Fainman Y, Alfonso TFern\'e1ndez, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kili\'e7 K, Lake EMR, Li L, Li T, M\'e4chler P, Mesquita RC, Miller EW, Nadella KMNaga Srini, U. N\'e4gerl V, Nasu Y, Nimmerjahn A, Ondr\'e1?kov\'e1 P, Pavone FS, Campos CPerez, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakad?ic S, Shoham S, Shroff SN, R. Silver A, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhl\'ed?ov\'e1 H, Xu C, Yang C, Yang M-H, Yellen G, Yizhar O, Zhao Y. Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics, 9, (2022).\par \par Holub D, Po?\'edzka P, Kizovsk\'fd M, Prochazka D, Samek O, Kaiser J. The potential of combining laser-induced breakdown spectroscopy and Raman spectroscopy data for the analysis of wood samples. Spectrochimica Acta Part B: Atomic Spectroscopy, 195, 106487 (2022).\par \par Mouralova K, Bednar J, Benes L, Plichta T, Prokes T, Fries J. Production of precision slots in copper foil using micro EDM. Scientific Reports, 12, 5023 (2022).\par \par Rebro?ov\'e1 K, Samek O, Kizovsk\'fd M, Bernatov\'e1 S, Hol\'e1 V, R??i?ka F. Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 12, 866463 (2022).\par \par Rebro?ov\'e1 K, Bernatov\'e1 S, ?iler M, Uhlirova M, Samek O, Je?ek J, Hol\'e1 V, R??i?ka F, Zem\'e1nek P. Raman spectroscopy?a tool for rapid differentiation among microbes causing urinary tract infections. Analytica Chimica Acta, 1191, 339292 (2022).\par \par Gigan S, Katz O, de Aguiar HB, Andresen ERavn, Aubry A, Bertolotti J, Bossy E, Bouchet D, Brake J, Brasselet S, Bromberg Y, Cao H, Chaigne T, Cheng Z, Choi W, ?i?m\'e1r T, Cui M, Curtis VR, Defienne H, Hofer M, Horisaki R, Horstmeyer R, Ji N, LaViolette AK, Mertz J, Moser C, Mosk AP, P\'e9gard NC, Piestun R, Popoff S, Phillips DB, Psaltis D, Rahmani B, Rigneault H, Rotter S, Tian L, Vellekoop IM, Waller L, Wang L, Weber T, Xiao S, Xu C, Yamilov A, Yang C, Y?lmaz H. Roadmap on wavefront shaping and deep imaging in complex media. Journal of Physics: Photonics, 4, 042501 (2022).\par \par Novackova I, Hrabalova V, Slaninova E, Sedlacek P, Samek O, Koller M, Krzyzanek V, Hrubanova K, Mrazova K, Nebesarova J, Obruca S. The role of polyhydroxyalkanoates in adaptation of Cupriavidus necator to osmotic pressure and high concentration of copper ions. International Journal of Biological Macromolecules, 206, 977-989 (2022).\par \par Pik\'e1lek T, Stib?rek M, Simpson S, Cizmar T, Tr\'e4g\'e5rdh J. Suppression of the Non-Linear Background in a Multimode Fibre CARS Endoscope. Biomedical Optics Express, 13, 862?864 (2022).\par \par Plichta T, Zahradnicek R, Cech V. Surface topography affects the nanoindentation data. Thin Solid Films, 745, 139105 (2022).\par \par Plichta T, ?irjovov\'e1 V, Zvonek M, Kalinka G, ?ech V. The Adhesion of Plasma Nanocoatings Controls the Shear Properties of GF/Polyester Composite. Polymers, 13, 593 (2021).\par \par Ozbakir Y, Jonas A, Kiraz A, Erkey C. An aerogel-based photocatalytic microreactor driven by light guiding for degradation of toxic pollutants. Chemical Engineering Journal, 409, 128108 (2021).\par \par Askari M, Kirkpatrick BC, ?i?m\'e1r T, Di Falco A. All-optical manipulation of photonic membranes. Opt. Express, 29, 14260?14268 (2021).\par \par Li S, Saunders C, Lum DJ, Murray-Bruce J, Goyal VK, Cizmar T, Phillips DB. Compressively sampling the optical transmission matrix of a multimode fibre. LIGHT-SCIENCE & APPLICATIONS, 10, 88 (2021).\par \par Tu?kov\'e1 T, ?iler M, Flaes DEBoonzajer, J\'e1kl P, Turtaev S, Kr\'e1tk\'fd S, Heintzmann R, Uhl\'ed?ov\'e1 H, ?i?m\'e1r T. Computational image enhancement of multimode fibre-based holographic endo-microscopy: harnessing the muddy modes. Opt. Express, 29, 38206?38220 (2021).\par \par Li S, Horsley SAR, Tyc T, Cizmar T, Phillips DB. Memory effect assisted imaging through multimode optical fibres. Nature Communications, 12, 3751 (2021).\par \par Leite IT, Turtaev S, Flaes DEBoonzaj, ?i?m\'e1r T. Observing distant objects with a multimode fiber-based holographic endoscope. APL Photonics, 6, 036112 (2021).\par \par Jonas A, Pil\'e1t Z, Je?ek J, Bernatov\'e1 S, Jedli?ka P, Aas M, Kiraz A, Zem\'e1nek P. Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field. ACS Applied Materials & Interfaces, 13, 50657?50667 (2021).\par \par Cifuentes A, Pik\'e1lek T, Ondr\'e1?kov\'e1 P, Amezcua-Correa R, Antonio-Lopez JEnrique, Cizmar T, Tr\'e4g\'e5rdh J. Polarization-resolved second-harmonic generation imaging through a multimode fiber. Optica, 8, 1065?1074 (2021).\par \par Samek O, Bernatov\'e1 S, Dohnal F. The potential of SERS as an AST methodology in clinical settings. NANOPHOTONICS, 10, 2537-2561 (2021).\par \par Kizovsk\'fd M, Pil\'e1t Z, Mylenko M, Hrouzek P, Kuta J, Skoup\'fd R, Krzy?\'e1nek V, Hrubanov\'e1 K, Adamczyk O, Je?ek J, Bernatov\'e1 S, Klementov\'e1 T, Gjevik A, ?iler M, Samek O, Zem\'e1nek P. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors, 11, 115 (2021).\par \par Bernatov\'e1 S, Rebro?ov\'e1 K, Pil\'e1t Z, ?er\'fd M, Gjevik A, Samek O, Je?ek J, ?iler M, Kizovsk\'fd M, Klementov\'e1 T, Hol\'e1 V, R??i?ka F, Zem\'e1nek P. Rapid detection of antibiotic sensitivity of Staphylococcus aureus by Raman tweezers. Eur. Phys. J. Plus, 136, 233 (2021).\par \par Silveira BM, Pik\'e1lek T, Stib?rek M, Ondr\'e1?kov\'e1 P, J\'e1kl P, Leite IT, ?i?m\'e1r T. Side-view holographic endomicroscopy via a custom-terminated multimode fibre. Opt. Express, 29, 23083?23095 (2021).\par \par Svak V, Flaj?manov\'e1 J, Chv\'e1tal L, ?iler M, Jon\'e1? A, Je?ek J, Simpson SH, Zem\'e1nek P, Brzobohat\'fd O. Stochastic dynamics of optically bound matter levitated in vacuum. Optica, 8, 220?229 (2021).\par \par Simpson SH, Arita Y, Dholakia K, Zem\'e1nek P. Stochastic Hopf bifurcations in vacuum optical tweezers. Phys. Rev. A, 104, 043518 (2021).\par \par Rudolf B, Du Y, Turtaev S, Leite IT, ?i?m\'e1r T. Thermal stability of wavefront shaping using a DMD as a spatial light modulator. Opt. Express, 29, 41808?41818 (2021).\par \par Flaes DBoonzajer, ?tolzov\'e1 H, ?i?m\'e1r T. Time-averaged image projection through a multimode fiber. Opt. Express, 29, 28005?28020 (2021).\par \par Stellinga D, Phillips DB, Mekhail SPeter, Selyem A, Turtaev S, ?i?m\'e1r T, Padgett MJ. Time-of-flight 3D imaging through multimode optical fibers. Science, 374, 1395-1399 (2021).\par \par Polimeno P, Iati MA, C. Boschi DEsposti, Simpson SH, Svak V, Brzobohat\'fd O, Zem\'e1nek P, Marago OM, Saija R. T-matrix calculations of spin-dependent optical forces in optically trapped nanowires. The European Physical Journal - Plus, 136, 86 (2021).\par \par N?mcov\'e1 A, Gonov\'e1 D, Samek O, Sipiczki M, Breierov\'e1 E, M\'e1rov\'e1 I. The Use of Raman Spectroscopy to Monitor Metabolic Changes in Stressed Metschnikowia sp. Yeasts. 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Science Advances, 6, (2020).\par \par Brzobohat\'fd O, Chv\'e1tal L, ?iler M, Zem\'e1nek P. Complex colloidal structures with non-linear optical properties formed in an optical trap. Opt. Express, 28, 37700?37707 (2020).\par \par Box SJ, Allen MP, Phillips DB, Simpson SH. Entropy Production in an Elementary, Light Driven Micro-Machine. Frontiers in Physics, 8, 538 (2020).\par \par Valero AC, Kislov D, Gurvitz EA, Shamkhi HK, Pavlov AA, Redka D, Yankin S, Zem\'e1nek P, Shalin AS. Nanovortex-driven all-dielectric optical diffusion boosting and sorting concept for lab-on-a-chip platforms. Advanced Science, 7, (2020).\par \par Rehman AU, Coskun UC, Rashid Z, Morova B, Jon\'e1? A, Erten A, Kiraz A. Size-based sorting of emulsion droplets in microfluidic channels patterned with laser-ablated guiding tracks. Analytical Chemistry, 92, 2597?2604 (2020).\par \par Flaj?manov\'e1 J, ?iler M, Jedli?ka P, Hrub\'fd F, Brzobohat\'fd O, Filip R, Zem\'e1nek P. Using the transient trajectories of an optically levitated nanoparticle to characterize a stochastic Duffing oscillator. Scientific Reports, 10, 14436 (2020).\par \par Bury?ka T, Va?ina M, Gielen F, Va?\'e1?ek P, van Vliet L, Je?ek J, Pil\'e1t Z, Zem\'e1nek P, Damborsk\'fd J, Hollfelder F, Prokop Z. Controlled Oil/Water Partitioning of Hydrophobic Substrates Extending the Bioanalytical Applications of Droplet-Based Microfluidics. Anal. Chem., 91, 10008-10015 (2019).\par \par Pavlokov\'e1 S, Mu?el\'edk J, Sabadkov\'e1 D, Bernatov\'e1 S, Samek O, Neumann D, Franc A. The effects of the treatment conditions on the dissolution profile of ethylcellulose coated pellets. Europ. J. of Pharmaceutical Sci., 132, 86-95 (2019).\par \par Rebro?ov\'e1 K, ?iler M, Samek O, R??i?ka F, Bernatov\'e1 S, Je?ek J, Zem\'e1nek P, Hol\'e1 V. Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy. Future Microbiology, 14, 509-517 (2019).\par \par Tr\'e4g\'e5rdh J, Pik\'e1lek T, ?er\'fd M, Meyer T, Popp J, ?i?m\'e1r T. Label-free CARS microscopy through a multimode fiber endoscope. Opt. Express, 27, 30055?30066 (2019).\par \par Jonas A, Kochanczyk M, Ramirez AD, Speidel M, Florin E-L. Mechanical Contact Spectroscopy: Characterizing Nanoscale Adhesive Contacts via Thermal Forces. LANGMUIR, 35, 5809-5820 (2019).\par \par Plidschun M, Weidlich S, ?iler M, Weber K, ?i?m\'e1r T, Schmidt MA. Nanobore fiber focus trap with enhanced tuning capabilities. Opt. Express, 27, 36221?36230 (2019).\par \par Donato MG, Brzobohat\'fd O, Simpson SH, Irrera A, Leonardi AA, Faro MJLo, Svak V, Marag\'f2 OM, Zem\'e1nek P. Optical Trapping, Optical Binding, and Rotational Dynamics of SiliconNanowires in Counter-Propagating Beams. Nano Lett., 19, 342-352 (2019).\par \par Brzobohat\'fd O, Chv\'e1tal L, Zem\'e1nek P. Optomechanical properties of optically self-arranged colloidal waveguides. Opt. 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Appl., 7, 110 (2018).\par \par Leite IT, Turtaev S, Jiang X, ?iler M, Cuschieri A, Russell PSt. J, ?i?m\'e1r T. Three-dimensional holographic optical manipulation through a high-numerical-aperture soft-glass multimode fibre. Nature Photon., 12, 33?39 (2018).\par \par Svak V, Brzobohat\'fd O, ?iler M, J\'e1kl P, Ka?ka J, Zem\'e1nek P, Simpson SH. Transverse spin forces and non-equilibrium particle dynamics in a circularly polarized vacuum optical trap. Nature Commun., 9, 5453 (2018).\par \par Gargiulo J, Violi IL, Cerrota S, Chv\'e1tal L, Cort\'e8s E, Perassi EM, Diaz F, Zem\'e1nek P, Stefani FD. Accuracy and Mechanistic Details of Optical Printing of Single Au and Ag Nanoparticles. ACS nano, 11, 9678?9688 (2017).\par \par Rebro?ov\'e1 K, ?iler M, Samek O, R??i?ka F, Bernatov\'e1 S, Je?ek J, Zem\'e1nek P, Hol\'e1 V. Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology, 12, 10 (2017).\par \par Kar\'e1sek V, ?iler M, Brzobohat\'fd O, Zem\'e1nek P. Dynamics of an optically bound structure made of particles of unequal sizes. Opt. Lett., 42, 1436-1439 (2017).\par \par Pil\'e1t Z, Jon\'e1? A, Je?ek J, Zem\'e1nek P. Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System. Sensors, 17, 2640 (2017).\par \par Hrubanov\'e1 K, Krzy?\'e1nek V, Samek O, Skoup\'fd R, ?iler M, Je?ek J, Obru?a S, Zem\'e1nek P. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 23, S1 (2017).\par \par Arzola AV, Villasante-Barahona M, Volke-Sep\'falveda K, J\'e1kl P, Zem\'e1nek P. Omnidirectional Transport in Fully Reconfigurable Two Dimensional Optical Ratchets. Phys. Rev. Lett., 118, 138002 (2017).\par \par Simpson SH, Zem\'e1nek P, Marag\'f2 OM, Jones PH, Hanna S. Optical Binding of Nanowires. Nano Lett., 17, 3485-3492 (2017).\par \par Obru?a S, Sedl\'e1?ek P, Mravec F, Krzy?\'e1nek V, Nebes\'e1?ov\'e1 J, Samek O, Ku?era D, Bene?ov\'e1 P, Hrubanov\'e1 K, Milerov\'e1 M, M\'e1rov\'e1 I. The presence of PHB granules in cytoplasm protects non-halophilic bacterial cells against the harmful impact of hypertonic environments. New Biotechnol., 39, 10 (2017).\par \par Rebro?ov\'e1 K, ?iler M, Samek O, R??i?ka F, Bernatov\'e1 S, Hol\'e1 V, Je?ek J, Zem\'e1nek P, Sokolov\'e1 J, Petr\'e1? P. Rapid identification of staphylococci by Raman spectroscopy. Sci. Rep., 7, 14846 (2017).\par \par Jon\'e1? A, Pil\'e1t Z, Je?ek J, Bernatov\'e1 S, Fo?t T, Zem\'e1nek P, Aas M, Kiraz A. Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators. J. Opt. Soc. Am. B, 34, 1855-1864 (2017).\par \par ?iler M, J\'e1kl P, Brzobohat\'fd O, Ryabov A, Filip R, Zem\'e1nek P. Thermally induced micro-motion by inflection in optical potential. Sci. 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Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 22, S3 (2016).\par \par Filip R, Zem\'e1nek P. Noise-to-signal transition of a Brownian particle in the cubic potential: I. general theory. Journal of Optics, 18, 065401 (2016).\par \par Zem\'e1nek P, ?iler M, Brzobohat\'fd O, J\'e1kl P, Filip R. Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry. Journal of Optics, 18, 065402 (2016).\par \par Irrera A, Magazzu A, Artoni P, Simpson SH, Hanna S, Jones PH, Priolo F, Gucciardi PGiuseppe, Marag\'f2 OM. Photonic Torque Microscopy of the Nonconservative Force Field for Optically Trapped Silicon Nanowires. Nano Lett., 16, 4181-4188 (2016).\par \par Bzdek BR, Power RM, Simpson SH, Reid JP, Royall CP. Precise, contactless measurement of the surface tension of picolitre aerosol droplets. Chem. 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Sensors, 15, 29635-29647 (2015).\par \par Hrubanov\'e1 K, Bernatov\'e1 S, Samek O, ?er\'fd M, Zem\'e1nek P, Nebes\'e1?ov\'e1 J, R??i?ka F, Krzy?\'e1nek V. Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements. Microscopy and Microanalysis, 21, 187-188 (2015).\par \par Brzobohat\'fd O, ?iler M, Trojek J, Chv\'e1tal L, Kar\'e1sek V, Zem\'e1nek P. Non-spherical gold nanoparticles trapped in optical tweezers: shape matters. Opt. Express, 23, 8179-8189 (2015).\par \par ?iler M, Zem\'e1nek P. Optical trapping in secondary maxima of focused laser beam. J. Quant. Spectrosc. Radiat. Transf., 162, 114 - 121 (2015).\par \par Burdikov\'e1 Z, Svindrych Z, Hickey C, Wilkinson MG, Auty MAE, Samek O, Bernatov\'e1 S, Krzy?\'e1nek V, Periasamy A, Sheehan JJ. SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry. Dairy Sci. 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Sensors, 14, 17725-17752 (2014).\par \par Samek O, Mlynarikov\'e1 K, Bernatov\'e1 S, Je?ek J, Krzy?\'e1nek V, ?iler M, Zem\'e1nek P, R??i?ka F, Hol\'e1 V, Mahelov\'e1 M. Candida parapsilosis Biofilm Identification by RamanSpectroscopy. Int. J. Mol. Sci., 15, 23924-23935 (2014).\par \par J\'e1kl P, Arzola AV, ?iler M, Chv\'e1tal L, Volke-Sep\'falveda K, Zem\'e1nek P. Optical sorting of nonspherical and living microobjects in moving interference structures. Opt. Express, 22, 29746-29760 (2014).\par \par Arzola AV, J\'e1kl P, Chv\'e1tal L, Zem\'e1nek P. Rotation, oscillation and hydrodynamic synchronization of optically trapped oblate spheroidal microparticles. Opt. Express, 22, 16207-16221 (2014).\par \par Arzola AV, Volke-Sep\'falveda K, Mateos JL. Dynamical analysis of an optical rocking ratchet: Theoryand experiment. Phys. Rev. E, 87, 062910:1-9 (2013).\par \par Brzobohat\'fd O, Kar\'e1sek V, ?iler M, Chv\'e1tal L, ?i?m\'e1r T, Zem\'e1nek P. Experimental demonstration of optical transport, sorting and self-arrangement using a `tractor beam'. Nature Photon., 7, 123-127 (2013).\par \par Bernatov\'e1 S, Samek O, Pil\'e1t Z, ?er\'fd M, Je?ek J, J\'e1kl P, ?iler M, Krzy?\'e1nek V, Zem\'e1nek P, Hol\'e1 V, Dvo?\'e1?kov\'e1 M, R??i?ka F. Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).\par \par Tomori Z, Antal\'edk M, Ke?a P, Ka?ka J, J\'e1kl P, ?er\'fd M, Bernatov\'e1 S, Zem\'e1nek P. Holographic Raman tweezers controlled by hand gestures and voice commands. Optics and Photonics Journal, 3, 331-336 (2013).\par \par ?iler M, Chv\'e1tal L, Zem\'e1nek P. Metallic nanoparticles in a standing wave: optical forceand heating. J. Quant. Spectrosc. Radiat. Transf., 126, 84-90 (2013).\par \par ?iler M, Zem\'e1nek P. Optical forces in a non-diffracting vortex beam. J. Quant. Spectrosc. Radiat. Transf., 126, 78-83 (2013).\par \par Brzobohat\'fd O, ?iler M, Je?ek J, J\'e1kl P, Zem\'e1nek P. Optical manipulation of aerosol droplets using aholographic dual and single beam trap. Opt. Lett., 38, 4601-4604 (2013).\par \par Pil\'e1t Z, Je?ek J, ?er\'fd M, Trt\'edlek M, Nedbal L, Zem\'e1nek P. Optical trapping of microalgae at 735?1064 nm: Photodamage assessment. J. Photochem. Photobiol. B, 121, 27 - 31 (2013).\par \par Aas M, Jon\'e1? A, Kiraz A, Brzobohat\'fd O, Je?ek J, Pil\'e1t Z, Zem\'e1nek P. Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching. Opt. Express, 21, 21380-21394 (2013).\par \par Po?\'edzka P, Proch\'e1zka D, Pil\'e1t Z, Kraj?arov\'e1 L, Kaiser J, Malina R, Novotn\'fd J, Zem\'e1nek P, Je?ek J, ?er\'fd M, Bernatov\'e1 S, Krzy?\'e1nek V, Dobransk\'e1 K, Novotn\'fd K, Trt\'edlek M, Samek O. Application of laser-induced breakdown spectroscopy to the analysis ofalgal biomass for industrial biotechnology. Spectrochim. Acta B, 74-75, 169-176 (2012).\par \par Trojek J, Chv\'e1tal L, Zem\'e1nek P. Optical alignment and confinement of an ellipsoidalnanorod in optical tweezers: a theoretical study. J. Opt. Soc. Am. A, 29, 1224?1236 (2012).\par \par ?iler M, J\'e1kl P, Brzobohat\'fd O, Zem\'e1nek P. Optical forces induced behavior of a particle in a non-diffracting vortex beam. Opt. Express, 20, 24304-24319 (2012).\par \par Pil\'e1t Z, Bernatov\'e1 S, Je?ek J, ?er\'fd M, Samek O, Zem\'e1nek P, Nedbal L, Trt\'edlek M. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. J. Appl. Phycol., 24, 541-546 (2012).\par \par ?iler M, ?i?m\'e1r T, Zem\'e1nek P. Speed enhancement of multi-particle chain in a travelingstanding wave. Appl. Phys. Lett., 100, 051103 (2012).\par \par Samek O, Zem\'e1nek P, Jon\'e1? A, Telle HH. Characterization of oil-producing microalgae using Raman spectroscopy. Laser Phys. Lett., 8, 701?709 (2011).\par \par Brzobohat\'fd O, Kar\'e1sek V, ?i?m\'e1r T, Zem\'e1nek P. Dynamic size tuning of multidimensional optically boundmatter. Appl. Phys. Lett., 99, 101105 (2011).\par \par ?i?m\'e1r T, Brzobohat\'fd O, Dholakia K, Zem\'e1nek P. The holographic optical micro-manipulation system basedon counter-propagating beams. Laser Phys. Lett., 8, 50?56 (2011).\par \par ?iler M, Zem\'e1nek P. Parametric study of optical forces acting upon nanoparticles in a single, or a standing, evanescentwave. J. Opt., 13, 044016:1?9 (2011).\par \par Brzobohat\'fd O, Kar\'e1sek V, ?iler M, Trojek J, Zem\'e1nek P. Static and dynamic behavior of two optically boundmicroparticles in a standing wave. Opt. Express, 19, 19613?19626 (2011).\par \par Jon\'e1? A, De Luca AC, Pesce G, Rusciano G, Sasso A, Caserta S, Guido S, Marrucci G. Diffusive Mixing of Polymers Investigated by Raman Microspectroscopy andMicrorheology. Langmuir, 26, 14223-14230 (2010).\par \par Brzobohat\'fd O, ?i?m\'e1r T, Kar\'e1sek V, ?iler M, Dholakia K, Zem\'e1nek P. Experimental and theoretical determination of opticalbinding forces. Opt. Express, 18, 25389?25402 (2010).\par \par Dholakia K, Zem\'e1nek P. Gripped by light: Optical binding. Rev. Mod. Phys., 82, 1767?1791 (2010).\par \par ?iler M, Zem\'e1nek P. Particle jumps between optical traps in a one-dimensionaloptical lattice. New. J. Phys., 12, 083001:1?20 (2010).\par \par Samek O, Al-Marashi JFM, Telle HH. The potential of Raman spectroscopy for the identification of biofilm formation by Staphylococcusepidermidis. Laser Phys. Lett., 7, 378?383 (2010).\par \par Samek O, Jon\'e1? A, Pil\'e1t Z, Zem\'e1nek P, Nedbal L, T?\'edska J, Kotas P, Trt\'edlek M. Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo. Sensors, 10, 8635?8651 (2010).\par \par Bartsch TF, Fisinger S, Kochanczyk MD, Huang R, Jon\'e1? A, Florin E-L. Detecting Sequential Bond Formation Using Three-Dimensional Thermal Fluctuation Analysis. Chem. Phys. Chem., 10, 1541-1547 (2009).\par \par Wu P, Huang R, Tischer C, Jon\'e1? A, Florin E-L. Direct Measurement of the Nonconservative Force Field Generated byOptical Tweezers. Phys. Rev. Lett., 103, 108101 (2009).\par \par Trojek J, Kar\'e1sek V, Zem\'e1nek P. Extreme axial optical force in a standing wave achieved by optimized object shape. Opt. Express, 17, 10472?10488 (2009).\par \par Kar\'e1sek V, Brzobohat\'fd O, Zem\'e1nek P. Longitudinal optical binding of several sphericalparticles studied by the coupled dipole method. J. Opt. A: Pure Appl. Opt., 11, 034009 (2009).\par \par Brzobohat\'fd O, ?i?m\'e1r T, Zem\'e1nek P. High quality quasi-Bessel beam generated by round-tipaxicon. Opt. Express, 16, 12688?12700 (2008).\par \par Jon\'e1? A, Zem\'e1nek P. Light at work: The use of optical forces for particlemanipulation, sorting, and analysis. Electophoresis, 29, 4813?4851 (2008).\par \par Kar\'e1sek V, ?i?m\'e1r T, Brzobohat\'fd O, Zem\'e1nek P, Garc\'e9s-Ch\'e1vez V, Dholakia K. Long-range one-dimensional longitudinal opticalbinding. Phys. Rev. Lett., 101, 143601 (2008).\par \par J\'e1kl P, ?i?m\'e1r T, ?er\'fd M, Zem\'e1nek P. Static optical sorting in a laser interference field. Appl. Phys. Lett., 92, 161110:1?3 (2008).\par \par ?iler M, ?i?m\'e1r T, Jon\'e1? A, Zem\'e1nek P. Surface delivery of a single nanoparticle under movingevanescent standing-wave illumination. New. J. Phys., 10, 113010 (2008).\par \par Kar\'e1sek V, Zem\'e1nek P. Analytical description of longitudinal optical binding of two spherical nanoparticles. J. Opt. A: Pure Appl. Opt., 9, S215?S220 (2007).\par \par J\'e1kl P, ?er\'fd M, Je?ek J, Li?ka M, Zem\'e1nek P. Axial optical trap stiffness influenced by retro-reflected beam. J. Opt. A: Pure Appl. Opt., 9, S251?S255 (2007).\par \par Dholakia K, MacDonald MP, Zem\'e1nek P, ?i?m\'e1r T. Cellular and colloidal separation using optical forces. Methods in Cell Biology, 82, 467?495 (2007).\par \par ?iler M, Zem\'e1nek P. Optical forces acting on a nanoparticle placed into an interference evanescent field. Opt. Commun., 275, 409?420 (2007).\par \par ?i?m\'e1r T, Zem\'e1nek P. Optical tracking of spherical micro-objects in spatially periodic interference fields. Opt. Express, 15, 2262?2272 (2007).\par \par J\'e1kl P, ?er\'fd M, Je?ek J, Zem\'e1nek P, Ormos P, Valkai S, Kelemen L. Opto-fluidic micromanipulation system based on integrated polymer waveguides. J. Optoel Adv. Mater., 9, 2148-2151 (2007).\par \par Milne G, Dholakia K, McGloin D, Volke-Sep\'falveda K, Zem\'e1nek P. Transverse particle dynamics in a Bessel beam. Opt. Express, 15, 13972?13987 (2007).\par \par Kar\'e1sek V, Dholakia K, Zem\'e1nek P. Analysis of optical binding in one dimension. Appl. Phys. B, 84, 149?156 (2006).\par \par Je?ek J, ?i?m\'e1r T, Ned?la V, Zem\'e1nek P. Formation of long and thin polymer fiber using nondiffracting beam. Opt. Express, 14, 8506-8515 (2006).\par \par ?iler M, ?i?m\'e1r T, ?er\'fd M, Zem\'e1nek P. Optical forces generated by evanescent standing waves and their usage for sub-micron particle delivery. Appl. Phys. B, 84, 157?165 (2006).\par \par ?i?m\'e1r T, ?iler M, Zem\'e1nek P. An optical nanotrap array movable over a milimetre range. Appl. Phys. B, 84, 197?203 (2006).\par \par ?i?m\'e1r T, ?iler M, ?er\'fd M, Zem\'e1nek P, Garc\'e9s-Ch\'e1vez V, Dholakia K. Optical sorting and detection of sub-micron objects in a motional standing wave. Phys. Rev. B, 74, 035105:1-6 (2006).\par \par ?i?m\'e1r T, Koll\'e1rov\'e1 V, Bouchal Z, Zem\'e1nek P. Sub-micron particle organization by self-imaging of non-diffracting beams. New. J. Phys., 8, 43 (2006).\par \par ?i?m\'e1r T, Garc\'e9s-Ch\'e1vez V, Dholakia K, Zem\'e1nek P. Optical conveyor belt for delivery of submicron objects. Appl. Phys. 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